Plant FIBer expression Database

Potri.003G115900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G62870 1028 / 0 unknown protein
AT1G12380 1002 / 0 unknown protein
AT3G17450 54 / 3e-07 hAT dimerisation domain-containing protein (.1)
AT1G79740 53 / 7e-07 hAT transposon superfamily (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G116600
[exp]
1377 / 0 AT1G62870 1017 / 0.0 unknown protein
Potri.015G130800
[exp]
951 / 0 AT1G12380 899 / 0.0 unknown protein
Potri.012G129100
[exp]
936 / 0 AT1G12380 890 / 0.0 unknown protein
Potri.002G188400
[exp]
45 / 0.0002 AT3G17450 960 / 0.0 hAT dimerisation domain-containing protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004325
[exp]
994 / 0 AT1G62870 977 / 0.0 unknown protein
Lus10032194
[exp]
751 / 0 AT1G12380 788 / 0.0 unknown protein
Lus10024556
[exp]
651 / 0 AT1G12380 797 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G115900.3 pacid=42786586 polypeptide=Potri.003G115901.1.p locus=Potri.003G115900 ID=Potri.003G115900.3.v4.1 annot-version=v4.1
ATGGCAACAAGTAACACAACAACTACACCACCACCACAACACCAACAAGTAGACACAGCCACGGCAGAGGAGATAACAGCAAAGGCAGCACACAAGAGAT
ATGAAGGTCTAATGATGGTAAGGACCAAAGCAATAAAAGGAAAAGGCGCGTGGTACTGGGCTCATTTAGAACCTATGTTGGTCCACAACACCGACACTGG
TCTTCCAAAAGCTGTGAAGCTACGGTGTTCATTATGCGACGCCGTTTTCTCCGCTTCCAATCCTTCAAGAACTGCCTCTGAGCATCTGAAACGTGGTACT
TGTCCTAATTTTAACTCTGTACCGAAACCCATTTCTTCAATCTCTCCAAACACTGCCTTACTGCCTTCTCCTTCTTCAAGCGGTGGTGTTGGTGGTGGTG
CTACCACAGTAGTGCATGGTAGTAGTAATAGGAAACGACCTGTCGTTTCAAGTTCAGGGCTTTCTGGTTCTGGTGGAGTTGCATCATCAGCGTATCCAGT
GACAGCCGTTGGTAGTACGTACCAAGTAAGTCCTCTTGCTATTGTGGATCCATCAAGATTCTCAGGTGAGATGGCTATGCTGCCCCAACAGCCACATTTG
ATGTTGTCTGGTGGGAAAGAGGATTTGGGTGCTTTAGCTATGTTGGAAGATAGTGTAAAGAGGTTGAAGAGTCCGAAAACTTCGCCAGGACAGGCTCTGA
GCAAGACCCAGATTGACTGTGCACTTGATTATTTAGCTGATTGGGTTTACGAGTCTTGTGGGTCTGTGTCCTTTTCGAGTTTAGAGCATCCAAAGTTCAG
GGCTTTTCTGAATCAAGTTGGTTTGCCTGTGGTTTCAAGGAGGGATTTTGTTGGTGGGAGATTGGATGTTAAGTACGAGGAAGCTAGGGCTGAGTCTGAG
GCAAGGATTAGAGATGCTATGTTTTTTCAGATTGCATCGGATGGGTGGAAGTTGAAGAGTAATGGGAGCTCTGGTGATGTAAATTTTGTGAATTTGACAG
TGAATTTGCCTAATGGAACTAGTTTGTATAGGAGAGCTGTGTTTGCTAGTGGTTCAGTGCCTTCCAAGTATGCAGAGGAGGTTTTTTGGGAGACCATAAC
AGGCATTTGTGGGAGTCTTGTGCAACAGTGTGTAGGGATAGTTGCAGACAGGTTTAAGGCCAAGGCATTGAGGAGTTTAGAGAACCAGAATCATTGGATG
ATCAATCTTTCTTGTCAGCTGCAAGGTTTCACTAGTTTGATTAAGGATTTTAGTAAAGAGCTTCCACTGTTCAGGACTGTGAGCGAGAATTGCTTCAAGC
TTGCAAGTTTTGTCAATAATAAGACCCCAGTTCGAAATAGTTTCCATAAATATCAATTGCAGGAGTATGGGAATGCAGGATTATTGAGAATGCCGTTGCG
GGAGTATGAGAAGATGGATTTTGGACCTGTGTATACAATGCTAGAGGACGTATTGAGCTCAGCTCGAGCATTGCAGTTGGTTTTGCATGATGAATCGTAT
AAGATAGTATCCATGGAGGATCCTACTGCAAGAGAAGTTGCTGAGATGATTGGAGATGTGAGATTTTGGAATGATATGGATGCGGTGCATTCGCTAGTTA
AGTTGATAAAGGAAATGGCTCAAGAGATTGAGGCAGAGAGGCCATTAGTCGGGCAATGTCTGCCGCTATGGGATGAACTTAGGGCAAAAGTGAAGGCCTG
GTGTTCAAAGTTCCACATTGCTGAAGGAGCAGTGGAGAAAGTGATTGAAACAAGGTTCAAGAAGAATTATCATCCTGCTTGGGCTGCTGCATACATACTC
GATCCACTTTATTTGCTGAGGGACAACAGTGGCAAATACCTTCCTCCTTTCAAATGCTTGACCTCGGAGCAGGAAAAGGATGTGGACAAGCTTATAACCA
GGCTTGTTTCAAGGGAGGAGGCTCATATTGTACTGATGGAACTCATGAAATGGAGAACAGAAGGGCTTGATCCTGTGTATGCAAAGGCTGTCCAGATGAG
GGAGAGGGATCCCATCACAGGAAAGATGAGAATAGTAAATCCCCAAAGCAGTAGGCTTGTCTGGGAGACTTATCTTACGGAGTTCAAGTCGCTGGGCAAA
GTTGCAGTTAGGCTTATTTTTCTTCATGCCACTTCATGTGGGTTCAAATGCAATTGGTCTTTGCTGAGATGGGTGTATGCCCATGGGCAATCAAGGGCAG
GCATGGACAAGGTGCAAAAGTTGATATTTATCGCTGCTCACTCAAAGCTAGATAGGAGGGAGTTTTTGAGCGATGAAGATAAGGATGCAGATCTCTTTGC
ATTGGCAAACGGTGAGGATGATGTGCTAAACGAGGTTCTTGTTGATGCATCCTCAGTAAGAGCTCGACAAAGATATTGTTGA
AA sequence
>Potri.003G115900.3 pacid=42786586 polypeptide=Potri.003G115901.1.p locus=Potri.003G115900 ID=Potri.003G115900.3.v4.1 annot-version=v4.1
MATSNTTTTPPPQHQQVDTATAEEITAKAAHKRYEGLMMVRTKAIKGKGAWYWAHLEPMLVHNTDTGLPKAVKLRCSLCDAVFSASNPSRTASEHLKRGT
CPNFNSVPKPISSISPNTALLPSPSSSGGVGGGATTVVHGSSNRKRPVVSSSGLSGSGGVASSAYPVTAVGSTYQVSPLAIVDPSRFSGEMAMLPQQPHL
MLSGGKEDLGALAMLEDSVKRLKSPKTSPGQALSKTQIDCALDYLADWVYESCGSVSFSSLEHPKFRAFLNQVGLPVVSRRDFVGGRLDVKYEEARAESE
ARIRDAMFFQIASDGWKLKSNGSSGDVNFVNLTVNLPNGTSLYRRAVFASGSVPSKYAEEVFWETITGICGSLVQQCVGIVADRFKAKALRSLENQNHWM
INLSCQLQGFTSLIKDFSKELPLFRTVSENCFKLASFVNNKTPVRNSFHKYQLQEYGNAGLLRMPLREYEKMDFGPVYTMLEDVLSSARALQLVLHDESY
KIVSMEDPTAREVAEMIGDVRFWNDMDAVHSLVKLIKEMAQEIEAERPLVGQCLPLWDELRAKVKAWCSKFHIAEGAVEKVIETRFKKNYHPAWAAAYIL
DPLYLLRDNSGKYLPPFKCLTSEQEKDVDKLITRLVSREEAHIVLMELMKWRTEGLDPVYAKAVQMRERDPITGKMRIVNPQSSRLVWETYLTEFKSLGK
VAVRLIFLHATSCGFKCNWSLLRWVYAHGQSRAGMDKVQKLIFIAAHSKLDRREFLSDEDKDADLFALANGEDDVLNEVLVDASSVRARQRYC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G62870 unknown protein Potri.003G115900
[exp]
0 1
AT1G47655 DOF Dof-type zinc finger DNA-bindi... Potri.014G036600
[exp]
2.00 0.8027
AT1G12380 unknown protein Potri.012G129100
[exp]
2.44 0.7954
AT1G62870 unknown protein Potri.001G116600
[exp]
4.35 0.8319
AT1G14630 unknown protein Potri.010G100700
[exp]
8.71 0.7180
AT4G28760 Protein of unknown function (D... Potri.002G253600
[exp]
13.85 0.7728
AT1G54610 Protein kinase superfamily pro... Potri.008G204400
[exp]
16.43 0.7862
AT3G09070 Protein of unknown function (D... Potri.006G096600
[exp]
16.43 0.7643
AT4G22130 SRF8 STRUBBELIG-receptor family 8 (... Potri.004G005301
[exp]
22.24 0.7148
AT1G12380 unknown protein Potri.015G130800
[exp]
25.53 0.7889
AT3G26935 DHHC-type zinc finger family p... Potri.017G063800
[exp]
29.17 0.7192

Potri.003G115900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.