Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-SMO1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12110 448 / 4e-160 ATSMO1-1, SMO1-1 sterol-4alpha-methyl oxidase 1-1 (.1) AT4G22756 434 / 1e-154 ATSMO1-2, ATSMO1, SMO1-2 sterol C4-methyl oxidase 1-2 (.1) AT4G22753 384 / 8e-135 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT1G07420 197 / 4e-62 SMO2-1, ATSMO1, ATSMO2-2, SMO2-2 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) AT2G29390 191 / 1e-59 ATSMO2-2, SMO2-2, ATSMO2, SMO2-1 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) AT1G14290 54 / 4e-08 SBH2 sphingoid base hydroxylase 2 (.1) AT1G69640 48 / 3e-06 SBH1 sphingoid base hydroxylase 1 (.1) AT3G02590 42 / 0.0003 Fatty acid hydroxylase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116500 [exp] 553 / 0 AT4G12110 439 / 1e-156 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.014G069500 [exp] 398 / 3e-140 AT4G12110 403 / 2e-142 sterol-4alpha-methyl oxidase 1-1 (.1) Potri.001G245300 [exp] 200 / 4e-63 AT1G07420 476 / 2e-172 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Potri.009G037400 [exp] 197 / 5e-62 AT1G07420 470 / 5e-170 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032193 [exp] 463 / 5e-166 AT4G12110 483 / 4e-174 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10024555 [exp] 428 / 1e-152 AT4G12110 442 / 1e-158 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004321 [exp] 393 / 7e-139 AT4G12110 422 / 2e-150 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004322 [exp] 337 / 3e-116 AT4G12110 357 / 2e-124 sterol-4alpha-methyl oxidase 1-1 (.1) Lus10004324 [exp] 319 / 1e-109 AT4G22756 345 / 3e-120 sterol C4-methyl oxidase 1-2 (.1) Lus10028908 [exp] 254 / 8e-84 AT4G22756 288 / 2e-97 sterol C4-methyl oxidase 1-2 (.1) Lus10040739 [exp] 200 / 6e-63 AT2G29390 454 / 5e-164 Arabidopsis thaliana sterol 4-alpha-methyl-oxidase 2-2, sterol 4-alpha-methyl-oxidase 2-2 (.1.2.3.4.5) Lus10016492 [exp] 200 / 1e-62 AT1G07420 463 / 3e-167 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10001556 [exp] 187 / 6e-58 AT1G07420 458 / 3e-165 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2) Lus10004988 [exp] 88 / 5e-21 AT1G07420 206 / 5e-68 Arabidopsis thaliana sterol 4-alpha-methyl oxidase 1, sterol 4-alpha-methyl-oxidase 2-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [poplar] [flax] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.003G116000.1 pacid=42785142 polypeptide=Potri.003G116000.1.p locus=Potri.003G116000 ID=Potri.003G116000.1.v4.1 annot-version=v4.1 ATGCTCCCGTACGCCACCCTGGACGAGGCAGCGGCGGCGCTAGGAAGGAATCTGACAGTAGCAGAGACGTTATGGTTCAATTACTCTGCAAAAAAGTCAG ATTATTATCTTTATTGCCATAACATCTTGTTTCTTTTTCTGATCTTCTCTGTCGTGCCTTTACCCGTGGTTTTCATAAGTCTATGGCGATCTAGTGGGTT TGATAAGTACAAGATTCAGCCTAAAGTCAAGCTGTCTCCTTCTGAGACTTTCAAGTGTTACAAGGATGTTATGTTTATGTTCTTTTTTGTCGTGGGGCCT TTACAGTTGGTTTCTTATCCATCTGTCAAGTTGATAGGGATTCGAACAAGTTTGCCATTGCCTTCCGGATGGGAAGTCTTTCTACAGTTGGTGGTGTATT TCATGGTGGAAGACTTTACCAATTACTGGATCCACAGATTTCTCCATGGTAAATGGGGATACGAGAAAATCCACAAAGTTCACCATGAATATACAGCTCC TATTGGGTTTGCTGCCCCATATGCACACTGGGCCGAAGTTTTGATCCTCGGAATTCCATCTTTTCTTGGTCCAGCTATGGTTCCTGGGCACATGATCACA TTTTGGCTTTGGATTGCTTTACGGCAGATTGAGGCGATTGAGACGCACAGCGGATACGACTTTCCCTGGACTCCCACAAAATATATTCCATTTTATGGTG GTGCAGACTACCATGATTACCATCATTATGTTGGAGGACAAAGCCAGAGCAACTTTGCATCGGTGTTCACATACTGTGATTTTATTTATGGAACTGACAA GGGCTATCGGTTTCAGAAGAAGCTTCTTTGGAAGTTGAAAAAGGGAGTGGAAAACGGTGTTGAGCAGAATGGAGGTTCCTACTATGTTCCTACACAAGAT CTTAAATCTGACTAG
AA sequence Show only first row Show all	>Potri.003G116000.1 pacid=42785142 polypeptide=Potri.003G116000.1.p locus=Potri.003G116000 ID=Potri.003G116000.1.v4.1 annot-version=v4.1 MLPYATLDEAAAALGRNLTVAETLWFNYSAKKSDYYLYCHNILFLFLIFSVVPLPVVFISLWRSSGFDKYKIQPKVKLSPSETFKCYKDVMFMFFFVVGP LQLVSYPSVKLIGIRTSLPLPSGWEVFLQLVVYFMVEDFTNYWIHRFLHGKWGYEKIHKVHHEYTAPIGFAAPYAHWAEVLILGIPSFLGPAMVPGHMIT FWLWIALRQIEAIETHSGYDFPWTPTKYIPFYGGADYHDYHHYVGGQSQSNFASVFTYCDFIYGTDKGYRFQKKLLWKLKKGVENGVEQNGGSYYVPTQD LKSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Potri.003G116000 [exp]	0	1	Pt-SMO1.1
AT5G51550		EXL3	EXORDIUM like 3 (.1)		Potri.012G128100 [exp]	1.00	0.8229
AT1G72880			Survival protein SurE-like pho...		Potri.003G041000 [exp]	2.82	0.7530
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Potri.005G210100 [exp]	3.00	0.7934
AT5G48800			Phototropic-responsive NPH3 fa...		Potri.002G242300 [exp]	3.46	0.8134
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.011G071000 [exp]	5.00	0.7797
AT3G08880			unknown protein		Potri.016G122350 [exp]	7.74	0.7338
AT3G15380			Plasma-membrane choline transp...		Potri.011G121100 [exp]	8.94	0.7866
AT3G19540			Protein of unknown function (D...		Potri.014G019900 [exp]	10.86	0.7011
AT1G23220			Dynein light chain type 1 fami...		Potri.008G133000 [exp]	15.87	0.7621
AT2G25790			Leucine-rich receptor-like pro...		Potri.018G045500 [exp]	16.43	0.7406

Compare expression of checked genes

Potri.003G116000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.