Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22760 669 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 388 / 5e-127 SLO1 SLOW GROWTH 1 (.1) AT4G16835 376 / 8e-123 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G45350 374 / 3e-122 CRR4 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G29760 368 / 9e-119 OTP81 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G37570 361 / 4e-118 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G12770 355 / 3e-114 MEF22 mitochondrial editing factor 22 (.1) AT2G13600 346 / 1e-110 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G44230 341 / 2e-109 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G29230 340 / 3e-109 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G207500 [exp] 390 / 4e-129 AT5G37570 602 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.009G044700 [exp] 389 / 9e-127 AT2G29760 1013 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.008G121400 [exp] 365 / 6e-120 AT1G13410 561 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G072500 [exp] 362 / 1e-118 AT3G21470 565 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.014G068800 [exp] 363 / 9e-118 AT2G45350 735 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G031600 [exp] 362 / 2e-116 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G019500 [exp] 359 / 4e-116 AT2G22410 791 / 0.0 SLOW GROWTH 1 (.1) Potri.004G125500 [exp] 356 / 2e-115 AT3G29230 829 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G081700 [exp] 358 / 3e-115 AT4G16835 852 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028907 [exp] 765 / 0 AT4G22760 632 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022701 [exp] 375 / 9e-124 AT5G37570 556 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014212 [exp] 374 / 3e-123 AT5G37570 561 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10018223 [exp] 367 / 2e-118 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040680 [exp] 361 / 5e-116 AT2G29760 926 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015874 [exp] 341 / 5e-110 AT2G45350 687 / 0.0 CHLORORESPIRATORY REDUCTION 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10009269 [exp] 342 / 2e-109 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 340 / 5e-108 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 339 / 9e-108 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029436 [exp] 335 / 1e-106 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.003G116100.4 pacid=42786246 polypeptide=Potri.003G116100.4.p locus=Potri.003G116100 ID=Potri.003G116100.4.v4.1 annot-version=v4.1 ATGCTGGCTGCCAAACTGACAACGATATTGAACAATTATCTGACTGCCAATCAGGCAAAACAAACACATGCATGCATCATCATTAATGGTTTTAATAACC TGGAGCCTCTCTTGGTTCGTCAAATCCTCCTGTCTGCTCGCAATAACCCTAGAAGAATTTCTCAATATGTCCATAGCATCCTTTACCATTTGCCACATCC AGATTCATTCTCATGGGGTTGGGCAATTAGATATTTCTCTCAGCAAGGCCAATTCAAGGAAGCCTTGTATCTTTATGTTCAGATGCAGAGACAAGGATTG TGTCCAAGCACATTTGCTGTATCTTCTGCTTTAAGGGCATATGCTAGGACCACATACAAGATGGGTGGAATGTCAATCCATGCTGAGAGTTATAAATATG GGTTCTCTAATTGTGTTTATGTTCAAACAGCACTTGTGGATTTATATTCAAAACTGGGTGATATGAACACCGCGCAGAAGGTTTTTGATGAGCTGGCAGA GAAAAATGTGGTTTCATGGAATTCAATTTTATCTGGGCATCTGAAATCTGGGAATTTACTGGAGGCTCAGAGGGTGTTCGACCAGATTTCAAAGAAGGAT GTCATATCTTGGAATTCAATGATATCAGGGTATGCGAAAATAGGAGACATGGACCGCGCATGTGTTCTGTTTCAACAGATGCCAGAGAAAAACTATTCTT CTTGGAATGCATTGATTAGTGGATACGTCAATTGTGGGGACATAAAATCAGCTTGGAGATTTTTTGATGCAATGCCCGAAAGAAATAGTGTTTCTTGGAT CACAATGATTGCTGGGTACTCAAAATGTGGAGATGTTGACTCTGCTAGCAAACTGTTCGATCAGATAGCTAAGAAAGATCTGCTCACGTTTAATGCCATG ATATCTTGCTTTGCTCAGAATAGCCAACCGAGGAAGGCCCTTTGGTTGTTTAGTGAGATGCTTAAGGCTTATGCAAATATTCAGCCAGATCAGATGACTT TGGCAAGTGTTGTATCAGCTTGTTCACAATTGGGAGACTTGAGATTTGCATCATGGATTGAGTCATACGTAAATGATCTTGGAACAGAGATTGATGACCA GTTGGTTACTGCTTTACTTGACCTATATGCAAAGTGTGGGAGTGTTGACAAGGCATACGAGCTATTTCATGGCTTAAACAAGAAGGATGTGGTTGCTTAT AGTGCTATGATCTCAGGATGTGGCATAAATGGCAAGGTTGCTGATGCTATCAAGTTGTTTGACATGATGGTGGATGCCCAAATCCATCCAAATTTAGCCA CCTTTACAGGGCTCTTAACTGCATGTAACCATGCTGGACTGGTCAAAGAGGGCTACCGATTCTTTAGTTCCATGAAGGACCATGGCCTTGTACCTTCAAC TGATCATTATGCAATCATGGTCGATCTTTTAGGGAGAGCTGGAAGATTACAAGATGCATATGAGCTGATAAAGAGTATGCCAATGCAACCTCATTCTGGG GTTTGGGGGGCTTTGCTGCTTGCATGCAACGTGCATAACAATGTGGAGTTAGGAGAGATTGCAGCTCAGCATTGTTTTAATTTGGAGACTAATGCAACTG CTTATTATTCTCTTCTTGCCAACATTTATTCCTCTGCTGGAAGGTGGGATGATGTCGGGAGATTGAGAAAGTTGTGGAAAGAGAAGAAATTGGCCAAGTT ATCAGGGTGTAGTTGGACAGAATCAACTTGA
AA sequence Show only first row Show all	>Potri.003G116100.4 pacid=42786246 polypeptide=Potri.003G116100.4.p locus=Potri.003G116100 ID=Potri.003G116100.4.v4.1 annot-version=v4.1 MLAAKLTTILNNYLTANQAKQTHACIIINGFNNLEPLLVRQILLSARNNPRRISQYVHSILYHLPHPDSFSWGWAIRYFSQQGQFKEALYLYVQMQRQGL CPSTFAVSSALRAYARTTYKMGGMSIHAESYKYGFSNCVYVQTALVDLYSKLGDMNTAQKVFDELAEKNVVSWNSILSGHLKSGNLLEAQRVFDQISKKD VISWNSMISGYAKIGDMDRACVLFQQMPEKNYSSWNALISGYVNCGDIKSAWRFFDAMPERNSVSWITMIAGYSKCGDVDSASKLFDQIAKKDLLTFNAM ISCFAQNSQPRKALWLFSEMLKAYANIQPDQMTLASVVSACSQLGDLRFASWIESYVNDLGTEIDDQLVTALLDLYAKCGSVDKAYELFHGLNKKDVVAY SAMISGCGINGKVADAIKLFDMMVDAQIHPNLATFTGLLTACNHAGLVKEGYRFFSSMKDHGLVPSTDHYAIMVDLLGRAGRLQDAYELIKSMPMQPHSG VWGALLLACNVHNNVELGEIAAQHCFNLETNATAYYSLLANIYSSAGRWDDVGRLRKLWKEKKLAKLSGCSWTEST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22760			Tetratricopeptide repeat (TPR)...		Potri.003G116100 [exp]	0	1
AT1G26370		RID1	RNA helicase family protein (....		Potri.008G096800 [exp]	2.44	0.8244
AT3G15690			Single hybrid motif superfamil...		Potri.003G061400 [exp]	5.09	0.7753
AT4G21300			Tetratricopeptide repeat (TPR)...		Potri.011G156800 [exp]	8.36	0.7927
AT2G20000		CDC27b, HBT	HOBBIT, CDC27 family protein ...		Potri.006G164000 [exp]	13.07	0.7849
AT1G28210		ATJ1	DNAJ heat shock family protein...		Potri.005G160200 [exp]	13.26	0.8143
AT2G26310			Chalcone-flavanone isomerase f...		Potri.018G048500 [exp]	16.06	0.7172
AT2G40930		PDE323, ATUBP5,...	PIGMENT DEFECTIVE EMBRYO 323, ...		Potri.016G031900 [exp]	16.49	0.7558
AT5G13690		NAGLU, CYL1	N-ACETYL-GLUCOSAMINIDASE, CYCL...		Potri.012G075932 [exp]	18.97	0.7162
AT2G41720		EMB2654	EMBRYO DEFECTIVE 2654, Tetratr...		Potri.006G049900 [exp]	20.49	0.7539
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Potri.004G214300 [exp]	22.97	0.7451	Pt-PNATH.2

Compare expression of checked genes

Potri.003G116100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.