Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22758 132 / 3e-37 unknown protein AT2G27830 61 / 6e-11 unknown protein AT5G37730 40 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116200 [exp] 276 / 1e-93 AT4G22758 117 / 5e-32 unknown protein Potri.004G188600 [exp] 61 / 3e-11 AT2G27830 160 / 5e-50 unknown protein Potri.009G149200 [exp] 61 / 6e-11 AT2G27830 183 / 6e-59 unknown protein Potri.003G116300 [exp] 54 / 9e-09 AT2G27830 125 / 2e-36 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000386 [exp] 134 / 5e-38 AT4G22758 139 / 2e-40 unknown protein Lus10006995 [exp] 98 / 1e-25 AT4G22758 110 / 9e-31 unknown protein Lus10020544 [exp] 67 / 4e-13 AT2G27830 181 / 3e-58 unknown protein Lus10000385 [exp] 58 / 2e-10 AT2G27830 110 / 5e-31 unknown protein Lus10009391 [exp] 58 / 2e-09 AT2G27830 130 / 7e-36 unknown protein Lus10006996 [exp] 51 / 1e-07 AT2G27830 100 / 6e-27 unknown protein Lus10027525 [exp] 46 / 4e-06 AT1G70780 104 / 3e-29 unknown protein Lus10039287 [exp] 46 / 5e-06 AT1G70780 104 / 4e-29 unknown protein Lus10015082 [exp] 44 / 2e-05 AT2G27830 64 / 3e-13 unknown protein Lus10017628 [exp] 44 / 2e-05 AT5G37730 102 / 3e-28 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G116200.1 pacid=42786451 polypeptide=Potri.003G116200.1.p locus=Potri.003G116200 ID=Potri.003G116200.1.v4.1 annot-version=v4.1 ATGCCAGAGAGTCATGTCCGGCGGAAAGTTGCGGCGAAAGGTGGTCGGAAGACCAGGCCACCACACCCATCTCCTTCTCCAAGTACACGAACACCACCAC CACGGCGATCGGTGAAGCCCTCCAAACCCATAAAGATTTTGAAACGATGCTCCTCAGAGCCCATGATGGGGTGGGGGAGCGGTACTGAAGATAGTATTGA TCAGCAGAAACAGAGGAGGAGCTTCTTATTCTATGAGAGTGATGGTGGTAGGGGTGTTTTATTTAGGCCTCATACTTGTACGGATGTTTTTTTATCCTCT CCTTCTCTGATCATGCCTACAAATTTCTCTCCTCGCTCCAGTTTTGATCAGGGATACAAGAAGGATGCAAAAGTGGTGGTTAATGTAACAGTTGAAGGGA GTCCAGGGCCAGTTAGGACCATGGTTAAACTGGGATCTAGTGTAGACGACACGATTAAGCTTGTGGTAGACAAATACAGTGAAGAGGGGCGAACCCCAAA ACTTGATAAGGACGCAGCTTTAACATACGAATTGCATCACTCCCATTTCAGCCTTCAAAGTTTAGATAAATCAGAATTGATTGGGGATGTTGGTAGCAGG AGCTTCTATCTCAGAAGAAGCAGCAGCAATCGTAGTTCTAATGGAGGCTCAACTTCTTCAATTGCAGAAACAGTTTCTGGAGGAGCCAACTTACCACCAA CACCAATACAAGGTCCCCCATTCTTACTGCCAGAATTCCTTGCTTGCAAATGGGGTAAAATTGTGAGAAGAGCGCGTAAGCTTTGGCGGGTCTTGGTTTG CTGGAAATGA
AA sequence Show only first row Show all	>Potri.003G116200.1 pacid=42786451 polypeptide=Potri.003G116200.1.p locus=Potri.003G116200 ID=Potri.003G116200.1.v4.1 annot-version=v4.1 MPESHVRRKVAAKGGRKTRPPHPSPSPSTRTPPPRRSVKPSKPIKILKRCSSEPMMGWGSGTEDSIDQQKQRRSFLFYESDGGRGVLFRPHTCTDVFLSS PSLIMPTNFSPRSSFDQGYKKDAKVVVNVTVEGSPGPVRTMVKLGSSVDDTIKLVVDKYSEEGRTPKLDKDAALTYELHHSHFSLQSLDKSELIGDVGSR SFYLRRSSSNRSSNGGSTSSIAETVSGGANLPPTPIQGPPFLLPEFLACKWGKIVRRARKLWRVLVCWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22758			unknown protein		Potri.003G116200 [exp]	0	1
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Potri.004G174600 [exp]	14.96	0.7002
AT2G33390			unknown protein		Potri.010G067200 [exp]	19.05	0.7449
AT5G04550			Protein of unknown function (D...		Potri.010G233700 [exp]	22.18	0.7230
AT2G28250		NCRK	Protein kinase superfamily pro...		Potri.004G212600 [exp]	22.44	0.7415
AT2G35380			Peroxidase superfamily protein...		Potri.001G145800 [exp]	29.69	0.7205
AT3G48890		MSBP2, ATMP2, A...	MEMBRANE STEROID BINDING PROTE...		Potri.015G125100 [exp]	34.20	0.7024	Pt-MP2.1
AT1G50640	AP2_ERF	ATERF3	ethylene responsive element bi...		Potri.005G219600 [exp]	42.48	0.7141
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Potri.004G020650 [exp]	45.16	0.6880
AT2G38060		PHT4;2	phosphate transporter 4;2 (.1)		Potri.016G111000 [exp]	57.15	0.7238
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.007G123000 [exp]	58.92	0.6779

Compare expression of checked genes

Potri.003G116200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.