Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12390 182 / 2e-60 Cornichon family protein (.1) AT1G12340 181 / 9e-60 Cornichon family protein (.1) AT1G62880 176 / 4e-58 Cornichon family protein (.1.2) AT4G12090 142 / 2e-44 Cornichon family protein (.1) AT3G12180 114 / 3e-33 Cornichon family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G116100 [exp] 232 / 6e-80 AT1G12390 184 / 3e-61 Cornichon family protein (.1) Potri.002G148500 [exp] 100 / 3e-28 AT1G12390 106 / 9e-31 Cornichon family protein (.1) Potri.006G057300 [exp] 95 / 1e-25 AT3G12180 109 / 3e-31 Cornichon family protein (.1) Potri.016G051000 [exp] 92 / 2e-24 AT3G12180 142 / 4e-44 Cornichon family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028906 [exp] 206 / 2e-69 AT1G12390 207 / 2e-70 Cornichon family protein (.1) Lus10004320 [exp] 202 / 5e-67 AT1G12390 173 / 1e-55 Cornichon family protein (.1) Lus10007000 [exp] 174 / 1e-56 AT1G12390 176 / 3e-57 Cornichon family protein (.1) Lus10006997 [exp] 174 / 1e-56 AT1G12390 176 / 3e-57 Cornichon family protein (.1) Lus10000384 [exp] 150 / 1e-47 AT1G12390 161 / 5e-52 Cornichon family protein (.1) Lus10009295 [exp] 129 / 3e-39 AT1G12390 142 / 7e-45 Cornichon family protein (.1) Lus10015866 [exp] 128 / 3e-39 AT1G12390 128 / 1e-39 Cornichon family protein (.1) Lus10030270 [exp] 110 / 2e-32 AT1G12390 94 / 2e-26 Cornichon family protein (.1) Lus10004023 [exp] 0 / 1 AT1G12340 101 / 5e-30 Cornichon family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03311 [poplar] [flax] Cornichon Cornichon protein
Representative CDS sequence Show only first row Show all	>Potri.003G116400.1 pacid=42784769 polypeptide=Potri.003G116400.1.p locus=Potri.003G116400 ID=Potri.003G116400.1.v4.1 annot-version=v4.1 ATGGGAGATCTCTTTGTATGGTTGATATCCTTCTTCATCCTTATTTCCTTAATTGTTATCGTCATCTTTCAGCTGATGGCCTTGGCGGATCTGGAGTTTG ATTACATCAATCCTTACGATTCCTCATCTAGGATAAATAAAGTGATTTTGCCAGAGTATATAACAGAAGGGGTTTTGTGCTTATTTTTTCTTGTTACAGG GCACTGGTGTATGTCACTTTTGTGTGTTCCATACCTTTATTACAACGCGAGGCTTTACACACGAAGACAGCATCTGGTAGATGTGACCGAGATATTCAAC ATGCTCAATTGGGAAAAGAAACAACGACTTTTCAAACTAGGCTATCTCATTGTTCTCCTGTTTCTTTCGATTTTCTGGATGATTTTGACCGCCTTGGAAG ACAGTGATTATGATTAG
AA sequence Show only first row Show all	>Potri.003G116400.1 pacid=42784769 polypeptide=Potri.003G116400.1.p locus=Potri.003G116400 ID=Potri.003G116400.1.v4.1 annot-version=v4.1 MGDLFVWLISFFILISLIVIVIFQLMALADLEFDYINPYDSSSRINKVILPEYITEGVLCLFFLVTGHWCMSLLCVPYLYYNARLYTRRQHLVDVTEIFN MLNWEKKQRLFKLGYLIVLLFLSIFWMILTALEDSDYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12390			Cornichon family protein (.1)		Potri.003G116400 [exp]	0	1
AT4G14660		NRPE7	RNA polymerase Rpb7-like, N-te...		Potri.010G077200 [exp]	1.00	0.8941
AT1G27970		NTF2B	nuclear transport factor 2B (....		Potri.001G057500 [exp]	2.00	0.8663
AT3G15395			unknown protein		Potri.001G402000 [exp]	6.00	0.8629
AT1G30845			unknown protein		Potri.005G235800 [exp]	6.00	0.8262
AT3G50860			Clathrin adaptor complex small...		Potri.007G025400 [exp]	9.21	0.8497
AT1G77350			unknown protein		Potri.019G066600 [exp]	12.00	0.8656
AT5G18800			Cox19-like CHCH family protein...		Potri.010G026000 [exp]	13.41	0.8354
AT3G46630			Protein of unknown function (D...		Potri.014G023200 [exp]	19.74	0.7958
AT1G55300		TAF7	TBP-associated factor 7 (.1.2)		Potri.003G218700 [exp]	19.79	0.7743
AT4G38240		GNTI, CGL1	N-ACETYLGLUCOSAMINYLTRANSFERAS...		Potri.004G206900 [exp]	19.97	0.8034

Compare expression of checked genes

Potri.003G116400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.