Plant FIBer expression Database

Potri.003G116450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G138850
[exp]
147 / 2e-45 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10009297
[exp]
42 / 0.0001 AT1G62935 43 / 3e-05 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G116450.1 pacid=42787457 polypeptide=Potri.003G116450.1.p locus=Potri.003G116450 ID=Potri.003G116450.1.v4.1 annot-version=v4.1
ATGAAGCTCGTTGCGTTACCAGTGTCTCTGTTCTTAAATGCTTCTCCGGTTCTGAACTTTTCATCTGCTGTGTTTTTGCATTTGTTGCTCAACATCTTAA
TTTGGGTCATCGTTTTATGGAGTTATAAGCCATCCAAAGATGAACTTGATGGACTCTGGCTACCTAAACCGTCTTTATGTGAATATCCATATGTAAAGAA
AAAAGGTGAGAATCAGAGCAATGGGAATGCTGAATCTTCATGTGAAGTTGCTGGAGACACATGTTTTAAGAGTAAGAGTGAGAATCACAGAAATGAGAAG
GATCGGGACAATGACAATGGCAAAGACAATGATGAGAAACACAGTTGTTCTGATGGTTGTAATGAAGACGACTACAACAATGGGAGTGCCAGTGTGATTG
GTTGTCAAGATGTTGCAGAAGAATTTGATGATAATCTGGAGAAGAGAATTGAAGACTTCATTGCTAAGGTTAATAAAGGATGGAGGGAAGAAATGTTAAG
AGAAGGGACCAATAAACAATCACCTTCATCATAA
AA sequence
>Potri.003G116450.1 pacid=42787457 polypeptide=Potri.003G116450.1.p locus=Potri.003G116450 ID=Potri.003G116450.1.v4.1 annot-version=v4.1
MKLVALPVSLFLNASPVLNFSSAVFLHLLLNILIWVIVLWSYKPSKDELDGLWLPKPSLCEYPYVKKKGENQSNGNAESSCEVAGDTCFKSKSENHRNEK
DRDNDNGKDNDEKHSCSDGCNEDDYNNGSASVIGCQDVAEEFDDNLEKRIEDFIAKVNKGWREEMLREGTNKQSPSS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G116450
[exp]
0 1
AT3G13080 EST2, ATMRP3, A... MULTIDRUG RESISTANCE PROTEIN 3... Potri.018G149700
[exp]
5.29 0.8411
AT3G17380 TRAF-like family protein (.1) Potri.017G049100
[exp]
12.72 0.8594
AT2G16790 P-loop containing nucleoside t... Potri.019G048200
[exp]
12.96 0.8494
AT4G01500 B3 NGA4 NGATHA4, AP2/B3-like transcrip... Potri.011G005200
[exp]
18.81 0.8446
AT4G39660 AGT2 alanine:glyoxylate aminotransf... Potri.007G080000
[exp]
21.35 0.7799
AT1G32790 CID11 CTC-interacting domain 11 (.1.... Potri.001G448800
[exp]
21.49 0.8506
AT5G14420 RGLG2 RING domain ligase2 (.1.2.3.4) Potri.012G090100
[exp]
22.44 0.7471
AT1G75510 Transcription initiation facto... Potri.002G028900
[exp]
23.00 0.8194
AT1G55850 ATCSLE1 cellulose synthase like E1 (.1... Potri.006G004232
[exp]
32.86 0.8361
AT2G18460 LCV3 like COV 3 (.1) Potri.005G124100
[exp]
40.62 0.8209

Potri.003G116450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.