Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12080 251 / 2e-81 AT-hook ATAHL1, AHL1 AT-hook motif nuclear-localized protein 1 (.1) AT4G22770 223 / 1e-70 AT-hook AT hook motif DNA-binding family protein (.1) AT4G00200 172 / 2e-51 AT-hook AT hook motif DNA-binding family protein (.1) AT4G25320 164 / 3e-47 AT-hook AT hook motif DNA-binding family protein (.1) AT5G62260 159 / 2e-45 AT-hook AT hook motif DNA-binding family protein (.1) AT5G51590 151 / 3e-42 AT-hook AT hook motif DNA-binding family protein (.1) AT2G33620 145 / 9e-41 AT-hook AT hook motif DNA-binding family protein (.1.2.3.4) AT2G45850 135 / 6e-37 AT-hook AT hook motif DNA-binding family protein (.1.2) AT3G61310 132 / 1e-35 AT-hook AT hook motif DNA-binding family protein (.1) AT1G63480 127 / 1e-33 AT-hook AT hook motif DNA-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G115800 [exp] 395 / 2e-138 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.002G148600 [exp] 251 / 6e-82 AT4G12080 248 / 2e-80 AT-hook motif nuclear-localized protein 1 (.1) Potri.014G070000 [exp] 250 / 2e-81 AT4G12080 233 / 2e-74 AT-hook motif nuclear-localized protein 1 (.1) Potri.012G129500 [exp] 202 / 2e-62 AT5G62260 202 / 2e-61 AT hook motif DNA-binding family protein (.1) Potri.014G082100 [exp] 168 / 2e-49 AT2G45850 229 / 8e-73 AT hook motif DNA-binding family protein (.1.2) Potri.002G158200 [exp] 160 / 1e-46 AT2G45850 219 / 4e-69 AT hook motif DNA-binding family protein (.1.2) Potri.002G005000 [exp] 154 / 6e-44 AT2G33620 228 / 8e-72 AT hook motif DNA-binding family protein (.1.2.3.4) Potri.003G090900 [exp] 149 / 5e-42 AT4G17950 216 / 3e-66 AT hook motif DNA-binding family protein (.1) Potri.001G143500 [exp] 147 / 5e-41 AT4G17950 243 / 9e-77 AT hook motif DNA-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004318 [exp] 270 / 3e-89 AT4G12080 305 / 3e-102 AT-hook motif nuclear-localized protein 1 (.1) Lus10030269 [exp] 215 / 2e-67 AT4G12080 294 / 7e-98 AT-hook motif nuclear-localized protein 1 (.1) Lus10004022 [exp] 210 / 2e-65 AT4G12080 288 / 1e-95 AT-hook motif nuclear-localized protein 1 (.1) Lus10031696 [exp] 184 / 4e-55 AT4G25320 260 / 1e-83 AT hook motif DNA-binding family protein (.1) Lus10015027 [exp] 171 / 2e-50 AT4G25320 267 / 5e-87 AT hook motif DNA-binding family protein (.1) Lus10038903 [exp] 167 / 2e-49 AT4G25320 257 / 4e-83 AT hook motif DNA-binding family protein (.1) Lus10031118 [exp] 157 / 2e-46 AT4G25320 231 / 2e-74 AT hook motif DNA-binding family protein (.1) Lus10037858 [exp] 159 / 1e-45 AT2G45850 278 / 1e-91 AT hook motif DNA-binding family protein (.1.2) Lus10030381 [exp] 157 / 2e-45 AT2G45850 284 / 3e-94 AT hook motif DNA-binding family protein (.1.2) Lus10011067 [exp] 149 / 5e-42 AT2G33620 225 / 4e-71 AT hook motif DNA-binding family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0615 [poplar] [flax] ALDC PF03479 [poplar] [flax] PCC Plants and Prokaryotes Conserved (PCC) domain
Representative CDS sequence Show only first row Show all	>Potri.003G116500.3 pacid=42785539 polypeptide=Potri.003G116500.3.p locus=Potri.003G116500 ID=Potri.003G116500.3.v4.1 annot-version=v4.1 ATGGAAACAACTGTGAGTAGTAACAGTGGTGGCGCGGGGGTAACAGTGGTGGCATCCGATGCTCCTTCAAATTACCAAATCGCTCCTAGGTCCGACAGCA ACCCGAATTCAACACCTGGATCTGCGCCACCTGCTCCGCCGCAAGCTCCGCCGCAAGCTCCACCTCCCCACCCGTCGCCCGCGGCGGCGACTATGCCATT GAAGAAGAAGAGAGGGAGGCCTAGAAAGTATGGTCCAGACGGGAGTGTCACCATGGCTTTGTCTCCGAAGCCGATTTCGTCGGCGGCTCCAGCACCATCT CCTCCGGTGATTGATTTCTCAGTTGTGAAGCAAAAGAAAATAAAGCCAGTGAGCAAGGCCAAGTTTGAGCTGGAGAATTTAGGTGAATGGGTTGCATGCT CTGTAGGTGCAAATTTTACTCCCCATATCATCACAGTCAATGCGGGCGAGGATGTCACAATGAAAATCATATCATTTTCCCAACAAGGTCCTCGAGCTAT ATGCGTGCTCTCAGCTAATGGTGTGATCTCCAGCGTTACACTTCGTCAGCCTGACTCTTCAGGGGGTACACTAACATACGAGGGTCGCTTTGAGATATTG TCTTTATCTGGTTCATTTATGCCCACTGAAACTGGAGGAACAAGAAGCAGATCTGGTGGGATGAGTGTTTCATTAGCAAGTCCTGATGGAAGAGTTGTGG GTGGTGGAGTTGCTGGTCTGCTGGTAGCTGCAAGCCCCGTACAGGTTGTAGTAGGTAGTTTTCTGGCTGGGAACCAGCATGAGCAGAAGCCAAAGAAACA GAAGCATGATTCGTTATCAGGTGTCATGCCGACTGCTGCCATTCCTATTTCTATTGCTGATCCTAAATCCAACTTCTCATCTCCCTCATTTCGAGGAGAT AGTTGGTCTCCTTTGCCTCCGGAATCAAGGAATAAGCCGGCTGACATTAACTTAACTTTGCCAGCAGGGTAA
AA sequence Show only first row Show all	>Potri.003G116500.3 pacid=42785539 polypeptide=Potri.003G116500.3.p locus=Potri.003G116500 ID=Potri.003G116500.3.v4.1 annot-version=v4.1 METTVSSNSGGAGVTVVASDAPSNYQIAPRSDSNPNSTPGSAPPAPPQAPPQAPPPHPSPAAATMPLKKKRGRPRKYGPDGSVTMALSPKPISSAAPAPS PPVIDFSVVKQKKIKPVSKAKFELENLGEWVACSVGANFTPHIITVNAGEDVTMKIISFSQQGPRAICVLSANGVISSVTLRQPDSSGGTLTYEGRFEIL SLSGSFMPTETGGTRSRSGGMSVSLASPDGRVVGGGVAGLLVAASPVQVVVGSFLAGNQHEQKPKKQKHDSLSGVMPTAAIPISIADPKSNFSSPSFRGD SWSPLPPESRNKPADINLTLPAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.003G116500 [exp]	0	1
AT4G31550	WRKY	ATWRKY11, WRKY1...	WRKY DNA-binding protein 11 (....		Potri.001G121300 [exp]	1.41	0.8775
AT1G78110			unknown protein		Potri.002G094700 [exp]	5.38	0.8484
AT3G06140			RING/U-box superfamily protein...		Potri.005G036400 [exp]	7.21	0.8709
AT5G06490			RING/U-box superfamily protein...		Potri.010G243500 [exp]	14.56	0.8813
AT5G07475			Cupredoxin superfamily protein...		Potri.003G150300 [exp]	23.10	0.8768
AT2G37740	C2H2ZnF	ATZFP10, ZFP10	zinc-finger protein 10 (.1)		Potri.016G101400 [exp]	29.79	0.8694	RBE.1
AT1G76500	AT-hook	SOB3, AHL29	SUPPRESSOR OF PHYB-4#3, AT-hoo...		Potri.005G257200 [exp]	30.28	0.8691
AT2G48140		EDA4	embryo sac development arrest ...		Potri.005G212000 [exp]	32.86	0.8699
AT2G46495			RING/U-box superfamily protein...		Potri.002G170300 [exp]	39.79	0.8635
AT2G03360			Glycosyltransferase family 61 ...		Potri.010G162100 [exp]	45.82	0.8613

Compare expression of checked genes

Potri.003G116500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.