Plant FIBer expression Database

Potri.003G116550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.003G116550.1 pacid=42787147 polypeptide=Potri.003G116550.1.p locus=Potri.003G116550 ID=Potri.003G116550.1.v4.1 annot-version=v4.1
ATGAATCCTCTTTTAATTAAGCTGCCTAGTGGGGTAGCTAATGCTGGCCTGTCCCTTCGTGATAAGAAGTTAACATGTGCAGTAGATCCACCAACCTTGG
AGTTCACAAAGACACAAACCAATGACCGATGGAAGGATTGCTGGGTTTCTCTTCCAAGAAGGAAAAAGACCTCTCAAAGCTTGATAAAGGAAACTTCGAA
GTATTCAAAGTTTCAAACTTCAAAACGACTGCCCAGTTTTCTCTTTTCTGAACTGGTATTAGCTATATTTAGCGCAAGAAAACGGTAA
AA sequence
>Potri.003G116550.1 pacid=42787147 polypeptide=Potri.003G116550.1.p locus=Potri.003G116550 ID=Potri.003G116550.1.v4.1 annot-version=v4.1
MNPLLIKLPSGVANAGLSLRDKKLTCAVDPPTLEFTKTQTNDRWKDCWVSLPRRKKTSQSLIKETSKYSKFQTSKRLPSFLFSELVLAIFSARKR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.003G116550
[exp]
0 1
AT5G05800 unknown protein Potri.011G125150
[exp]
2.44 0.9422
AT3G13540 MYB ATMYB5, ATM2 myb domain protein 5 (.1) Potri.003G079100
[exp]
3.46 0.9428
AT5G12980 Cell differentiation, Rcd1-lik... Potri.014G155500
[exp]
11.40 0.9046
AT5G53210 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-h... Potri.015G022300
[exp]
13.78 0.9165
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.001G369700
[exp]
17.49 0.9194
AT1G32780 GroES-like zinc-binding dehydr... Potri.011G152800
[exp]
18.76 0.9203
AT5G25160 C2H2ZnF ZFP3 zinc finger protein 3 (.1) Potri.018G123800
[exp]
20.49 0.8841
AT1G32780 GroES-like zinc-binding dehydr... Potri.011G152900
[exp]
21.97 0.9214
AT5G18470 Curculin-like (mannose-binding... Potri.013G050500
[exp]
27.27 0.8860
AT1G24140 Matrixin family protein (.1) Potri.013G033200
[exp]
28.98 0.8691

Potri.003G116550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.