Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22790 442 / 2e-151 MATE efflux family protein (.1) AT4G29140 213 / 2e-62 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT1G58340 195 / 7e-56 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT5G19700 190 / 3e-54 MATE efflux family protein (.1) AT4G23030 187 / 3e-53 MATE efflux family protein (.1) AT5G52050 179 / 3e-50 MATE efflux family protein (.1) AT5G49130 175 / 1e-48 MATE efflux family protein (.1) AT2G38510 171 / 3e-47 MATE efflux family protein (.1) AT1G71870 150 / 1e-39 MATE efflux family protein (.1) AT1G15170 149 / 2e-39 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G115400 [exp] 684 / 0 AT4G22790 487 / 3e-169 MATE efflux family protein (.1) Potri.007G043100 [exp] 223 / 2e-66 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.003G121400 [exp] 221 / 2e-65 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 219 / 5e-65 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 218 / 2e-64 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.013G115600 [exp] 216 / 5e-64 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 215 / 4e-63 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 195 / 2e-55 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.016G134800 [exp] 179 / 1e-49 AT2G38510 597 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007006 [exp] 524 / 0 AT4G22790 549 / 0.0 MATE efflux family protein (.1) Lus10017836 [exp] 224 / 7e-67 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 207 / 7e-60 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 206 / 2e-59 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10028230 [exp] 191 / 3e-54 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10038987 [exp] 175 / 1e-48 AT1G71870 527 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 173 / 9e-48 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10009788 [exp] 167 / 1e-45 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 155 / 5e-40 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 154 / 1e-39 AT1G15170 542 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.003G116700.1 pacid=42785318 polypeptide=Potri.003G116700.1.p locus=Potri.003G116700 ID=Potri.003G116700.1.v4.1 annot-version=v4.1 ATGTGTGCACCATCAAAAACTGAAGAGAATCGTATTGACAAAACCTCTCAACCTCCTCCAATATCTTCGCCTACCACCCAAATATGGCCGGCAAATCTTA TGCAAATGATTCTTTTGGAGATAAAAACACAGCGAGGGATGGCTCTGCCCTTGTTGGCAATGAATTTGACATGGTTTGCCAAATCAGCCATCACAACTGC ATTTCTAGGCAGACTTGGAGAGCTCCAGTTAGCTGGTGGCGCTCTTGGGTTCACTTTTGCTAATTTCACTGGTTTTTCTGTCTTGAATGGGCTATGTGGT GCCATGGAACCTATCTGTGGTCAAGCTTATGGAGCTAAAAATTTCAAGCTACTACACAAGACCCTCCTCATGGCAACTTTCTTGTTGCTAATTGCAACCC TGCCTATATCTTTCTTGTGGCTTAACATGGACAAGATTCTAATCTATTTTGGCCAACAAGAAGACATTTCACGTGTTGCAAAGAACTACCTTTTTTATCT CCTCCCCGACTTAATAATCACCTGTTTGCTTTGTCCTCTCAAAGCATACTTGAGCTCCCAAAGTGTAACAGTCCCTATAATGTTTTGCTCTGCTTTGGGC CTAGCTTTTCACATCCCGATCAACATCTTACTAGCAAAAGCCAAGGGTCTTGAGGGAGTGTCTATGGCAATATGGATAACGGATCTTATAGTCGTGATTT TACTTGCTTTATACGTGCTGATAATGGAAAACAGGAAAGGAGGGAAGTGGAAGGAGGGAGGGTGGTTAGATCAAGATGTTCATGACTGGCTCAAATTGCT AAAACTTTGTGCACCATGTTGCCTTACCACCTGCCTTGAATGGTGGTGCTGGGAGATCTTGGTCTTGCTTACAGGACGACTACCAAATGCCAGGCAGGCA GTCGGAGTGGTAGCAATTGTGATGAACTTTGACTACTTGCTCTTCTCTGTGATGCTATCGCTTGCAACTTGTGCTTCCACTCGTGTGTCAAATGAGCTTG GTGCAAATCAAGCAGGTCGTGCTTACCAATCTGCATATGTGTCTCTGGGAGCAAGCACCGTTTCAGGTTGCGTTGGTGCCTTGGTGATGATAGGGGCTAG AGGTGTTTGGGGGTCTCTGTTTACCCATGATCAGGGGATCAGGAAAGGTGTAAAGAAGATGATGTTGCTTATGGCTTTGATTGAAGTGGTAAATTTTCCT TTAGCAGTTTGCGGAGGCATAGCCCGGGGAACAGCTAGGCCATGGTTGAGCACCTATGCCAATCTTGGCGGGTTCTATTTTCTAGCCGTGCCAATAGCAA TACTCTTAGCCTTCAAAGCAGCCCTAGGCCTCGGTGGGTTGTTGATAGGCTTCCTGATTGGATTAGCTGCGTGCTTGATTTTGTTAGTAGGTTTCGTTGT TAGGATTGATTGGCAGGTAGAAGCCGACAAGGCACAAAAACTTGCGTCCTGTGACGTGCAAGAGGATGTTAGGATTAAAGAATGCGTGAACCACCGAACT ATAGAAACAGAAGATGGTGCTGAAGTATGA
AA sequence Show only first row Show all	>Potri.003G116700.1 pacid=42785318 polypeptide=Potri.003G116700.1.p locus=Potri.003G116700 ID=Potri.003G116700.1.v4.1 annot-version=v4.1 MCAPSKTEENRIDKTSQPPPISSPTTQIWPANLMQMILLEIKTQRGMALPLLAMNLTWFAKSAITTAFLGRLGELQLAGGALGFTFANFTGFSVLNGLCG AMEPICGQAYGAKNFKLLHKTLLMATFLLLIATLPISFLWLNMDKILIYFGQQEDISRVAKNYLFYLLPDLIITCLLCPLKAYLSSQSVTVPIMFCSALG LAFHIPINILLAKAKGLEGVSMAIWITDLIVVILLALYVLIMENRKGGKWKEGGWLDQDVHDWLKLLKLCAPCCLTTCLEWWCWEILVLLTGRLPNARQA VGVVAIVMNFDYLLFSVMLSLATCASTRVSNELGANQAGRAYQSAYVSLGASTVSGCVGALVMIGARGVWGSLFTHDQGIRKGVKKMMLLMALIEVVNFP LAVCGGIARGTARPWLSTYANLGGFYFLAVPIAILLAFKAALGLGGLLIGFLIGLAACLILLVGFVVRIDWQVEADKAQKLASCDVQEDVRIKECVNHRT IETEDGAEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22790			MATE efflux family protein (.1...		Potri.003G116700 [exp]	0	1
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.018G029100 [exp]	1.41	0.8632
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.007G085700 [exp]	1.73	0.8564	Pt-STGA1.4
AT1G07730			Disease resistance-responsive ...		Potri.010G212000 [exp]	2.82	0.8488
AT1G31050	bHLH	bHLH111	basic helix-loop-helix (bHLH) ...		Potri.010G098900 [exp]	6.70	0.8403
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Potri.014G168232 [exp]	7.48	0.8380
AT4G31140			O-Glycosyl hydrolases family 1...		Potri.018G000900 [exp]	13.85	0.8723
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.001G139900 [exp]	14.83	0.8326
AT1G78510		SPS1	solanesyl diphosphate synthase...		Potri.011G099500 [exp]	15.65	0.8081
AT1G17050		SPS2	solanesyl diphosphate synthase...		Potri.011G101200 [exp]	16.12	0.8078
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	21.56	0.8158

Compare expression of checked genes

Potri.003G116700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.