Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60890 62 / 1e-13 ZPR2 LITTLE ZIPPER 2, protein binding (.1.2) AT2G45450 49 / 3e-08 ZPR1 LITTLE ZIPPER 1, protein binding (.1) AT3G52770 42 / 2e-06 ZPR3 LITTLE ZIPPER 3, protein binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G114900 [exp] 181 / 8e-61 AT3G60890 57 / 1e-11 LITTLE ZIPPER 2, protein binding (.1.2) Potri.014G071200 [exp] 68 / 4e-16 AT3G60890 62 / 1e-13 LITTLE ZIPPER 2, protein binding (.1.2) Potri.002G149600 [exp] 65 / 7e-15 AT3G60890 65 / 1e-14 LITTLE ZIPPER 2, protein binding (.1.2) Potri.006G083201 [exp] 52 / 2e-09 AT3G52770 54 / 2e-10 LITTLE ZIPPER 3, protein binding (.1) Potri.010G237600 [exp] 47 / 2e-08 AT3G52770 49 / 7e-10 LITTLE ZIPPER 3, protein binding (.1) Potri.008G021766 [exp] 42 / 3e-06 AT3G52770 51 / 1e-10 LITTLE ZIPPER 3, protein binding (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028902 [exp] 119 / 2e-36 AT3G60890 59 / 1e-12 LITTLE ZIPPER 2, protein binding (.1.2) Lus10008913 [exp] 111 / 2e-33 AT3G60890 58 / 2e-12 LITTLE ZIPPER 2, protein binding (.1.2) Lus10006673 [exp] 95 / 1e-26 AT3G60890 47 / 4e-08 LITTLE ZIPPER 2, protein binding (.1.2) Lus10007017 [exp] 82 / 2e-21 AT3G60890 48 / 3e-08 LITTLE ZIPPER 2, protein binding (.1.2) Lus10021375 [exp] 51 / 2e-09 AT3G52770 77 / 3e-20 LITTLE ZIPPER 3, protein binding (.1) Lus10017055 [exp] 51 / 2e-09 AT3G52770 77 / 5e-20 LITTLE ZIPPER 3, protein binding (.1) Lus10022725 [exp] 49 / 6e-09 AT3G52770 73 / 5e-19 LITTLE ZIPPER 3, protein binding (.1) Lus10014188 [exp] 48 / 2e-08 AT3G52770 72 / 1e-18 LITTLE ZIPPER 3, protein binding (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G117200.2 pacid=42785702 polypeptide=Potri.003G117200.2.p locus=Potri.003G117200 ID=Potri.003G117200.2.v4.1 annot-version=v4.1 ATGTGCACTAACGGAGTAGACAGGATCCCTTCTCCTTTCCACCCTTCAAAGAGAAGGCAAAGATCAAAGAAATGTAAGGTTCAGGTTATTGGGCTCACCT GCAGCAGGAGGTCAGGATATGAGGAATGGGAGGAGAAGAACATGGAGCTAAAGAACTTGAAGCTGTATTTAGAGAACCAAAGTATTGTTGAAGAGAACGA GAAGCTGAGGAAGAAAGCTAGTCTTCTCCACCAAGAAAACCTGGCCTTAATGTCTGAACTTCAAAAGAAATTCCCTCATTTGGATCGCTTCTCCAACACC CTACTTCTCTTACACAAACACTAG
AA sequence Show only first row Show all	>Potri.003G117200.2 pacid=42785702 polypeptide=Potri.003G117200.2.p locus=Potri.003G117200 ID=Potri.003G117200.2.v4.1 annot-version=v4.1 MCTNGVDRIPSPFHPSKRRQRSKKCKVQVIGLTCSRRSGYEEWEEKNMELKNLKLYLENQSIVEENEKLRKKASLLHQENLALMSELQKKFPHLDRFSNT LLLLHKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G60890		ZPR2	LITTLE ZIPPER 2, protein bindi...		Potri.003G117200 [exp]	0	1
AT5G12235		CLE22	CLAVATA3/ESR-RELATED 22 (.1)		Potri.006G036700 [exp]	6.78	0.8211
AT2G28315			Nucleotide/sugar transporter f...		Potri.009G011100 [exp]	13.82	0.8718
AT3G45850			P-loop containing nucleoside t...		Potri.009G026000 [exp]	18.00	0.8715
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.001G188800 [exp]	27.12	0.8322	ATHB.12
AT4G27270			Quinone reductase family prote...		Potri.001G410700 [exp]	30.91	0.8490	Pt-FQR1.1
AT4G27270			Quinone reductase family prote...		Potri.004G028900 [exp]	36.74	0.8413
AT1G79820		SGB1	SUPPRESSOR OF G PROTEIN BETA1,...		Potri.001G185300 [exp]	39.59	0.8267
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036800 [exp]	48.09	0.8296
AT5G26910			unknown protein		Potri.013G010500 [exp]	54.54	0.8252
AT4G10550			Subtilase family protein (.1.2...		Potri.001G455800 [exp]	61.50	0.7585

Compare expression of checked genes

Potri.003G117200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.