Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22840 500 / 6e-177 Sodium Bile acid symporter family (.1) AT4G12030 467 / 5e-164 BAT5, BASS5 BILE ACID:SODIUM SYMPORTER FAMILY PROTEIN 5, bile acid transporter 5 (.1.2) AT3G25410 206 / 4e-62 Sodium Bile acid symporter family (.1) AT2G26900 159 / 2e-44 BASS2 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) AT1G78560 141 / 1e-37 Sodium Bile acid symporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G178000 [exp] 204 / 2e-61 AT3G25410 486 / 5e-171 Sodium Bile acid symporter family (.1) Potri.018G074400 [exp] 160 / 8e-45 AT2G26900 554 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Potri.003G008700 [exp] 158 / 7e-44 AT1G78560 238 / 2e-74 Sodium Bile acid symporter family (.1) Potri.011G103200 [exp] 146 / 2e-39 AT1G78560 496 / 9e-176 Sodium Bile acid symporter family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008914 [exp] 527 / 0 AT4G22840 466 / 3e-161 Sodium Bile acid symporter family (.1) Lus10028901 [exp] 524 / 0 AT4G22840 464 / 4e-160 Sodium Bile acid symporter family (.1) Lus10038237 [exp] 198 / 6e-59 AT3G25410 544 / 0.0 Sodium Bile acid symporter family (.1) Lus10025862 [exp] 196 / 4e-58 AT3G25410 542 / 0.0 Sodium Bile acid symporter family (.1) Lus10007016 [exp] 159 / 4e-44 AT2G26900 610 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10006672 [exp] 157 / 3e-43 AT2G26900 603 / 0.0 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10036583 [exp] 148 / 2e-40 AT2G26900 229 / 4e-71 bile acid:sodium symporter family protein 2, Sodium Bile acid symporter family (.1) Lus10005565 [exp] 148 / 3e-40 AT1G78560 549 / 0.0 Sodium Bile acid symporter family (.1) Lus10013700 [exp] 152 / 5e-40 AT1G78560 554 / 0.0 Sodium Bile acid symporter family (.1) Lus10035803 [exp] 147 / 2e-39 AT1G78560 224 / 5e-69 Sodium Bile acid symporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF01758 [poplar] [flax] SBF Sodium Bile acid symporter family
Representative CDS sequence Show only first row Show all	>Potri.003G117300.1 pacid=42785754 polypeptide=Potri.003G117300.1.p locus=Potri.003G117300 ID=Potri.003G117300.1.v4.1 annot-version=v4.1 ATGAGTGTAGTAAACAGTAGAACGCTGCAGATTCAACGCCCAGATATCTCCCAATTTCATAACCAAAAAATTTCCCACGTTCGCAAATGTTGTAATAATC ACCTTTCAGTTTTGACCCCAAGTCGCTCCTTCAAATCCTTTTCAGAGTTGCGATCTTTGGGTTTTTCAATGCCATTAAAATCGAATTTTCATTGTGGGAG TTCAAGATTCTTGGTGAGCAGATGTGAGTCCCAGAAGTTCTCTGATTCTTTGGAACCGGATCATGATGAGAATTATGTGACCGACTTAAGTCAGATGGTA GAGCAGAAGGAGGCTTCTATAGTGGATATGTTGGAGCAATCAAATTCCCTTTTGCCTCACATAGTCCTTGCTAGTACATTGTTGGCTCTTGTCCATCCCC CCTCTTTCACGTGGTTTACCACCAGGTATTATGCTCCTGCATTAGGGTTTTTGATGTTTGCAGTTGGGGTTAATTCCAGTGAAAAGGATTTTCTTGAAGC GTTCAACAGACCAGCAGCTATATTGGCTGGGTATGTTGGCCAGTTTGTTGTGAAGCCAAGTCTTGGATATCTGTTTGGTATAATTTCAGTGTCAGTATTT GGGCTTCCTACTCCAATAGGTGCTGGGATCATGTTGGTATCTTGTGTTAGTGGGGCTCAGCTTTCAAATTATGCTACTTTTCTGACAGACCCTCCAATGG CTCCTCTAAGCATTGTCATGACATCAATGTCCACGGCTACTGCAGTTTTTGTTACTCCATTATTATCTCTATTGCTCATTGGAAAAAGACTGCCTGTTGA TGTGAAAGGAATGGTATCCAGTATTATGCAGATCGTAGTTGCTCCAATTGCTGCAGGCTTACTTCTAAACAGGTTGTTTCCGCAGATTTCTGGTGTTATT CGGCCATTTTTGCCACCACTATCAGTACTAGTAACAGCCTGTTGTGTTGGAGCACCACTTGCTATTAATGTTGACTCAGTTATGTCCCCTTTTGGAGTAA CCATAGTATCGCTTATTATTGCATTTCATCTATCAGCATTTGTAGTTGGTTACTATTTCACAGGTTTTGTCTTCCACAAGGCATCTGACTTAAAAGCACT ACAAAGAACACTATCCTATGAGACAGGAATGCAGAGCAGTCTTCTAGCTCTCGCACTTGCTAACAGGTTTTTCAAAGATCCACTTGTTGCTGTGCCTCCA GCAATCTCTACAGTAATCATGTCTTTGATGGGATTTTCTCTGGTCATGATTTGGGCCAAGAAGAAAGAATAG
AA sequence Show only first row Show all	>Potri.003G117300.1 pacid=42785754 polypeptide=Potri.003G117300.1.p locus=Potri.003G117300 ID=Potri.003G117300.1.v4.1 annot-version=v4.1 MSVVNSRTLQIQRPDISQFHNQKISHVRKCCNNHLSVLTPSRSFKSFSELRSLGFSMPLKSNFHCGSSRFLVSRCESQKFSDSLEPDHDENYVTDLSQMV EQKEASIVDMLEQSNSLLPHIVLASTLLALVHPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFLEAFNRPAAILAGYVGQFVVKPSLGYLFGIISVSVF GLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPMAPLSIVMTSMSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSIMQIVVAPIAAGLLLNRLFPQISGVI RPFLPPLSVLVTACCVGAPLAINVDSVMSPFGVTIVSLIIAFHLSAFVVGYYFTGFVFHKASDLKALQRTLSYETGMQSSLLALALANRFFKDPLVAVPP AISTVIMSLMGFSLVMIWAKKKE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22840			Sodium Bile acid symporter fam...		Potri.003G117300 [exp]	0	1
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Potri.003G005900 [exp]	5.65	0.8838
AT5G47730			Sec14p-like phosphatidylinosit...		Potri.006G004000 [exp]	6.48	0.9136	Pt-SSH1.2
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.006G251100 [exp]	7.21	0.8771
AT3G19460			Reticulon family protein (.1.2...		Potri.001G300400 [exp]	8.12	0.9040
AT3G18670			Ankyrin repeat family protein ...		Potri.008G022900 [exp]	13.96	0.8998
AT2G45300			RNA 3'-terminal phosphate cycl...		Potri.014G068300 [exp]	19.20	0.8941
AT3G27470			Protein of unknown function (D...		Potri.017G065200 [exp]	20.19	0.9009
AT5G13260			unknown protein		Potri.003G164100 [exp]	26.98	0.8864
AT5G04700			Ankyrin repeat family protein ...		Potri.008G023101 [exp]	33.43	0.8883
AT2G47500			P-loop nucleoside triphosphate...		Potri.002G201000 [exp]	34.14	0.8929

Compare expression of checked genes

Potri.003G117300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.