Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12450 342 / 2e-118 SNARE associated Golgi protein family (.1) AT4G22850 334 / 3e-115 SNARE associated Golgi protein family (.1.2) AT4G12000 320 / 2e-109 SNARE associated Golgi protein family (.1) AT2G02370 219 / 1e-69 SNARE associated Golgi protein family (.1.2) AT1G22850 62 / 1e-10 SNARE associated Golgi protein family (.1) AT1G03260 61 / 2e-10 SNARE associated Golgi protein family (.1) AT5G19070 49 / 1e-06 SNARE associated Golgi protein family (.1) AT1G44960 45 / 2e-05 SNARE associated Golgi protein family (.1) AT4G09580 42 / 0.0003 SNARE associated Golgi protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G114600 [exp] 498 / 8e-180 AT1G12450 317 / 3e-108 SNARE associated Golgi protein family (.1) Potri.001G078700 [exp] 225 / 3e-72 AT2G02370 390 / 2e-136 SNARE associated Golgi protein family (.1.2) Potri.003G151800 [exp] 211 / 1e-66 AT2G02370 377 / 2e-131 SNARE associated Golgi protein family (.1.2) Potri.019G071900 [exp] 62 / 9e-11 AT1G22850 330 / 8e-113 SNARE associated Golgi protein family (.1) Potri.013G099600 [exp] 60 / 5e-10 AT1G22850 305 / 6e-102 SNARE associated Golgi protein family (.1) Potri.010G030800 [exp] 48 / 3e-06 AT5G19070 321 / 7e-111 SNARE associated Golgi protein family (.1) Potri.001G070800 [exp] 43 / 0.0002 AT1G44960 278 / 2e-94 SNARE associated Golgi protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006674 [exp] 374 / 8e-131 AT1G12450 365 / 4e-127 SNARE associated Golgi protein family (.1) Lus10007018 [exp] 374 / 2e-130 AT1G12450 364 / 6e-127 SNARE associated Golgi protein family (.1) Lus10008915 [exp] 340 / 1e-117 AT1G12450 338 / 5e-117 SNARE associated Golgi protein family (.1) Lus10028900 [exp] 322 / 3e-110 AT1G12450 348 / 9e-121 SNARE associated Golgi protein family (.1) Lus10012163 [exp] 223 / 2e-71 AT2G02370 401 / 4e-141 SNARE associated Golgi protein family (.1.2) Lus10007583 [exp] 196 / 5e-61 AT2G02370 399 / 2e-140 SNARE associated Golgi protein family (.1.2) Lus10041062 [exp] 61 / 2e-10 AT1G22850 377 / 2e-131 SNARE associated Golgi protein family (.1) Lus10006162 [exp] 61 / 3e-10 AT1G22850 394 / 2e-137 SNARE associated Golgi protein family (.1) Lus10021942 [exp] 54 / 3e-08 AT5G19070 343 / 9e-120 SNARE associated Golgi protein family (.1) Lus10006050 [exp] 49 / 7e-07 AT1G44960 273 / 2e-93 SNARE associated Golgi protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09335 [poplar] [flax] SNARE_assoc SNARE associated Golgi protein
Representative CDS sequence Show only first row Show all	>Potri.003G117400.2 pacid=42787353 polypeptide=Potri.003G117400.2.p locus=Potri.003G117400 ID=Potri.003G117400.2.v4.1 annot-version=v4.1 ATGACTTTTTATGAGGATGATAGTGTGGTGCCAGAGCTAATAATGAGCATGGAGGGTGATAAAATTGATGGTGGAGATAATAGCGAAGGGGATTATGTGA ATTTGAGAGATGAGAATGGGGCTGGTGAAAGGTGTAATCTTTGTGGTTTTTATTGGGGGTTTGGATGGTCTGTGTTCTGGTATTGGGTTAAGTTGGCTTT GCTGTTTACCTTTATTGGATTATTAGCTGCTGCTTGTGTCATGTGGGTTGGCCCCTTTTTGATGGATAAGGAGATTATCCCTATCATGAATTGGGAGACA AGAACATTTAGCACTCCGGTATTGGCAATTCTTCTCTTTGCCTCTGTGGCATTGTTCCCCACTCTACTTCTACCATCATCACCATCTATGTGGGTGGCTG GGATGACGTTTGGCTATGGGATTGGATTCCTATTAATAATAACTGCAGCTGCTGTGGGTGTATCACTTCCATATTTAATTGGCTCATTGTTCCTTCATAA AATTCAAGGGTGGTTAGAAAAATATCCAAAAAGAGCTGCAATTTTGAGAGCAGCTGGTGAAGGAAACTGGTTTCATCAGTTTCGAGCTGTGACTCTAATC AGGATTTCTCCATTTCCATATATTCTGTATAATTACTGTGCTGTTGCAACAAATGTTAAGTATGGTCCTTACTTATTGGGATCGTTGGTGGGAATGGTGC CAGAGATATTTGTTTCAATCTATACTGGGATCCTTATACGGACCTTGGCAGATGCTTCAAGTGACCGACGCACTCTCTCAGCTCCACAAATTGTCTTCAC GGTGTTTGGTTTCTGCGCCACGGTGGTTGCCACAATTATAATCACAGTGTATGCCAAAAGGCAGCTGAAGGTCATGCAAGATGAACCGCTACTGGAATAG
AA sequence Show only first row Show all	>Potri.003G117400.2 pacid=42787353 polypeptide=Potri.003G117400.2.p locus=Potri.003G117400 ID=Potri.003G117400.2.v4.1 annot-version=v4.1 MTFYEDDSVVPELIMSMEGDKIDGGDNSEGDYVNLRDENGAGERCNLCGFYWGFGWSVFWYWVKLALLFTFIGLLAAACVMWVGPFLMDKEIIPIMNWET RTFSTPVLAILLFASVALFPTLLLPSSPSMWVAGMTFGYGIGFLLIITAAAVGVSLPYLIGSLFLHKIQGWLEKYPKRAAILRAAGEGNWFHQFRAVTLI RISPFPYILYNYCAVATNVKYGPYLLGSLVGMVPEIFVSIYTGILIRTLADASSDRRTLSAPQIVFTVFGFCATVVATIIITVYAKRQLKVMQDEPLLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12450			SNARE associated Golgi protein...		Potri.003G117400 [exp]	0	1
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.002G207865 [exp]	1.41	0.8688
AT3G01170			Ribosomal protein L34e superfa...		Potri.017G084500 [exp]	4.00	0.8424
AT2G41640			Glycosyltransferase family 61 ...		Potri.006G048500 [exp]	4.47	0.8104
AT1G01840			unknown protein		Potri.014G077000 [exp]	5.19	0.8028
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Potri.014G160500 [exp]	6.70	0.8285	Pt-IBR5.1
AT4G21865			unknown protein		Potri.010G065666 [exp]	9.89	0.8049
AT2G10950			BSD domain-containing protein ...		Potri.006G065200 [exp]	11.66	0.8043
AT3G56310			Melibiase family protein (.1.2...		Potri.019G056700 [exp]	12.72	0.7840
AT2G31130			unknown protein		Potri.013G118000 [exp]	15.23	0.8124
AT5G01990			Auxin efflux carrier family pr...		Potri.016G141700 [exp]	19.07	0.7713

Compare expression of checked genes

Potri.003G117400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.