Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12460 1073 / 0 Leucine-rich repeat protein kinase family protein (.1) AT1G62950 1041 / 0 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G01890 448 / 5e-143 Leucine-rich receptor-like protein kinase family protein (.1) AT3G28040 447 / 9e-142 Leucine-rich receptor-like protein kinase family protein (.1) AT5G49660 369 / 4e-113 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G07180 368 / 1e-112 ERL2 ERECTA-like 2 (.1) AT1G17230 367 / 2e-111 Leucine-rich receptor-like protein kinase family protein (.1) AT5G63930 364 / 3e-110 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 365 / 1e-109 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT2G26330 348 / 3e-105 QRP1, ER QUANTITATIVE RESISTANCE TO PLECTOSPHAERELLA 1, ERECTA, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G114500 [exp] 1509 / 0 AT1G12460 1074 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G058600 [exp] 493 / 3e-160 AT3G56370 1174 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.014G147300 [exp] 487 / 3e-157 AT3G28040 1156 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G091000 [exp] 485 / 5e-157 AT3G56370 1227 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.002G233600 [exp] 477 / 2e-153 AT3G28040 1116 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.016G137000 [exp] 462 / 4e-148 AT3G56370 1116 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G108600 [exp] 452 / 2e-144 AT5G01890 1115 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 376 / 2e-114 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G130400 [exp] 372 / 5e-114 AT5G62230 1412 / 0.0 ERECTA-like 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006675 [exp] 1126 / 0 AT1G12460 984 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10007019 [exp] 629 / 0 AT1G62950 553 / 0.0 leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10007020 [exp] 486 / 7e-166 AT1G12460 435 / 2e-146 Leucine-rich repeat protein kinase family protein (.1) Lus10012877 [exp] 478 / 2e-154 AT3G56370 1162 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030526 [exp] 474 / 6e-153 AT3G56370 1170 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025223 [exp] 461 / 6e-148 AT3G56370 1026 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025139 [exp] 458 / 4e-147 AT3G56370 1021 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10014174 [exp] 436 / 2e-138 AT5G01890 1032 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10022738 [exp] 431 / 2e-136 AT5G01890 1035 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011761 [exp] 381 / 1e-117 AT5G63930 913 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.003G117500.1 pacid=42785347 polypeptide=Potri.003G117500.1.p locus=Potri.003G117500 ID=Potri.003G117500.1.v4.1 annot-version=v4.1 ATGAACATTTATACTGTGAGCATGAGAAGATTGTATCAATTGTGTCTTTCACATGCTCTTTTGCTCTTATTTTTTTTCTTCCTTGGATTCACTGCTACTA CAGTTTCACCAGCTACCGAGAAGGAGATCTTACTACAATTCAAGGCTAACATCAGCAATGACCCTTACAACAGTTTGGCTAATTGGGTTCCAAGTGGCAA TCCTTGTGATTACAGTGGTGTGTTCTGCAATCCTCTTGGTTTTGTACAGAGAATTGTTTTGTGGAACACAAGCTTATCTGGGGTTTTGTCACCAGCATTA TCAGGTTTGAGATCTTTAAGAATCTTGACATTGTTTGGCAATAAATTTACAAGCAATATCCCACAAGAATATGCAGAATTAAGCACATTGTGGAAGATAA ATTTGAGTTCTAATGCCTTATCTGGGTCAATACCAGAATTCATTGGTGATTTGCAAAATATTAGATTTCTTGATTTGTCAAGGAATGGTTACAGTGGGGA GATTCCATTTGCTTTGTTCAAGTTTTGTTACAAGACCAAGTTTGTTTCCTTTTCTCATAATAGTCTTTCTGGTTCAATCCCCGCTTCAATTGCAAACTGC ACTAATCTTGAAGGGTTTGATTTCTCTTTCAATAATTTTAGTGGTGAATTGCCTTCTGGGATTTGTGATATTCCTGTATTAGAGTATATGTCTTTGAGGA GCAATGTGTTAACTGGGAGCGTGCTTGAAGAGGTTTCAAAATGCCAAAGATTGCGTTTTTTGGATCTTGGCAGCAATTTGTTTACTGGGTTGGCTCCATT TGAAATTCTTGGATCGCAAAACTTGAGTTACTTCAATGTATCGCATAATGCGTTTCAAGGAGAGATTCCAGCGATGAGAACTTGCAGTGAGAGTCTGGAG TTCTTTGATGCGTCAAGTAATAATCTGGACGGTGAAATCCCTTTGGGCATTACAAACTGCAAAAGCCTTGAATTTATCGACTTGGGATTTAACAGGCTGA ATGGGAGCATTCCAGCTGGTATTGCAAATTTGGAGAGGCTTTTGGTGTTTAAATTGGGTGACAATTCAATACAGGGGACAATCCCTGCAGAATTTGGAAG CATTGAGTGGCTTCTTCTTTTGGATTTGCACAATCTCAATCTTTCTGGTGAAATTCCCAAAGATATAAGTAACTGCAGGTTTCTTCGTGAGCTGGATGTT TCTGGAAATGCTTTGGATGGAGAAATTCCCAACACCCTTGACAATATGACTTCCCTGGAAGTCCTTGATTTGCATAGAAACCAGCTAGATGGTAGCATAC CGGAGACTCTAGGAAGCCTATCAAACCTCAAGCTTCTTGAATTGTCACAAAATAACCTTTCTGGGACAATTCCATATTCTCTTGGAAAATTAGCAAACTT AAAATATTTCAATGTCTCCTCCAACAACCTTTCTGGTCCCATTCCTTCAATACCAAAAATCCAGGCTTTCGGCACAGCTGCATTTCTTAACAATTCTGGG CTCTGTGGTGTCCCTTTGGATATTTCTTGCTCAGGAGCTGGCAATGGGACAGGTAATGGATCAAAGAAAAACAAAGTGCTCAGTAACTCTGTTATTGTGG CGATTGTTGCTGCTGCACTGATCCTTACTGGGGTCTGTGTGGTATCGATTATGAACATCAGGGCACGCAGCAGGAAAAAAGACAACGTGACAACTGTTGT TGAGAGCACACCATTGGATTCAACAGATTCAAATGTTATAATTGGGAAGCTGGTTCTGTTCAGCAAGACTTTGCCTTCTAAGTACGAAGATTGGGAGGCT GGAACCAAAGCTTTGCTAGACAAGGAATGTTTAATAGGTGGTGGATCAATTGGAACAGTATACAGAACTACTTTTGAAGGTGGAGTTTCTATTGCAGTGA AGAAGCTTGAGACCCTGGGTAGGATCAGAAGCCAAGATGAATTTGAGCAAGAAATCGGATTGTTAGGTAATCTTCGACATCCCAATTTGGTTGCATTTCA AGGGTATTACTGGTCTTCAACGATGCAGTTAATTTTGTCTGAATTTGTTCCAAGTGGCAATCTATACGACAATCTGCATGGGCTTAATTATCCAGGAACC AGTACTGGTGTTGGGAATAGAGAATTGTACTGGTCTAGAAGGTTTCAAATTGCTCTTGGAATAGCGAGAGCGCTTTCTTATCTTCACCATGACTGTAGGC CTCCAATTCTCCATCTCAACATCAAATCCACTAACATACTATTAGATGAAAATTATGAGGCCAAGTTGTCTGATTATGGGTTGGGGAGGTTGCTTCCCAT TTTGGACAATTATGGTTTAACCAAATTCCACAATGCAGTAGGGTATGTTGCACCAGAGTTGGCTCAGAGTCTAAGATCGAGTGATAAATGTGATGTGTAT AGTTTTGGAGTAATTCTTTTGGAGCTGGTAACCGGGAGAAAACCAGTGGAGAGTCCAACAGCAAATGAGGTGGTGGTTCTGTGTGAATATGTTCGTGGAT TGCTGGAGACTGGCTCTGCTTCAGATTGCTTTGATAGAAGCTTGCGAGGTTTTTCAGAGAATGAGTTGATTCAAGTCATGAAGCTAGGATTGATTTGTAC ATCTGAGGTTCCTTCAAGAAGACCAAGCATGGCTGAGGTTGTTCAGGTCCTTGAGTCCATAAGGTTGGAGTAG
AA sequence Show only first row Show all	>Potri.003G117500.1 pacid=42785347 polypeptide=Potri.003G117500.1.p locus=Potri.003G117500 ID=Potri.003G117500.1.v4.1 annot-version=v4.1 MNIYTVSMRRLYQLCLSHALLLLFFFFLGFTATTVSPATEKEILLQFKANISNDPYNSLANWVPSGNPCDYSGVFCNPLGFVQRIVLWNTSLSGVLSPAL SGLRSLRILTLFGNKFTSNIPQEYAELSTLWKINLSSNALSGSIPEFIGDLQNIRFLDLSRNGYSGEIPFALFKFCYKTKFVSFSHNSLSGSIPASIANC TNLEGFDFSFNNFSGELPSGICDIPVLEYMSLRSNVLTGSVLEEVSKCQRLRFLDLGSNLFTGLAPFEILGSQNLSYFNVSHNAFQGEIPAMRTCSESLE FFDASSNNLDGEIPLGITNCKSLEFIDLGFNRLNGSIPAGIANLERLLVFKLGDNSIQGTIPAEFGSIEWLLLLDLHNLNLSGEIPKDISNCRFLRELDV SGNALDGEIPNTLDNMTSLEVLDLHRNQLDGSIPETLGSLSNLKLLELSQNNLSGTIPYSLGKLANLKYFNVSSNNLSGPIPSIPKIQAFGTAAFLNNSG LCGVPLDISCSGAGNGTGNGSKKNKVLSNSVIVAIVAAALILTGVCVVSIMNIRARSRKKDNVTTVVESTPLDSTDSNVIIGKLVLFSKTLPSKYEDWEA GTKALLDKECLIGGGSIGTVYRTTFEGGVSIAVKKLETLGRIRSQDEFEQEIGLLGNLRHPNLVAFQGYYWSSTMQLILSEFVPSGNLYDNLHGLNYPGT STGVGNRELYWSRRFQIALGIARALSYLHHDCRPPILHLNIKSTNILLDENYEAKLSDYGLGRLLPILDNYGLTKFHNAVGYVAPELAQSLRSSDKCDVY SFGVILLELVTGRKPVESPTANEVVVLCEYVRGLLETGSASDCFDRSLRGFSENELIQVMKLGLICTSEVPSRRPSMAEVVQVLESIRLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12460			Leucine-rich repeat protein ki...		Potri.003G117500 [exp]	0	1
AT3G07990		SCPL27	serine carboxypeptidase-like 2...		Potri.010G220100 [exp]	2.82	0.8026
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	3.46	0.7913
AT1G45688			unknown protein		Potri.002G124600 [exp]	5.29	0.7961
AT1G19490	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.006G114600 [exp]	5.65	0.7627
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	13.41	0.7574
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Potri.008G046600 [exp]	15.49	0.7279
AT3G07210			unknown protein		Potri.002G245700 [exp]	15.49	0.7918
AT1G68410			Protein phosphatase 2C family ...		Potri.008G123600 [exp]	17.83	0.7954
AT2G26770		SCAB1	stomatal closure-related actin...		Potri.009G066800 [exp]	17.86	0.7193
AT4G01210			glycosyl transferase family 1 ...		Potri.002G166100 [exp]	18.00	0.7419

Compare expression of checked genes

Potri.003G117500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.