Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ACS10.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G62960 664 / 0 ACS10 ACC synthase 10 (.1) AT5G51690 583 / 0 ACS12 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) AT4G37770 414 / 2e-140 ACS8 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) AT4G26200 394 / 9e-133 ACS7, ATACS7 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) AT3G49700 391 / 3e-131 AtACS9, ACS9, ETO3 ETHYLENE OVERPRODUCING 3, 1-aminocyclopropane-1-carboxylate synthase 9 (.1) AT4G08040 387 / 5e-130 ACS11 1-aminocyclopropane-1-carboxylate synthase 11 (.1) AT5G65800 383 / 3e-128 CIN5, ETO2, ACS5, ATACS5 ETHYLENE OVERPRODUCER 2, CYTOKININ-INSENSITIVE 5, ACC synthase 5 (.1) AT2G22810 383 / 3e-128 ACC4, ACS4, ATACS4 1-AMINOCYCLOPROPANE-1-CARBOXYLIC ACID SYNTHASE POLYPEPTIDE, 1-aminocyclopropane-1-carboxylate synthase 4 (.1) AT4G11280 373 / 7e-124 ATACS6, ACS6 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) AT1G01480 370 / 1e-122 AT-ACC2, ACS2 1-amino-cyclopropane-1-carboxylate synthase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G132100 [exp] 651 / 0 AT5G51690 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Potri.018G067000 [exp] 424 / 2e-144 AT4G26200 676 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.006G149600 [exp] 421 / 3e-143 AT4G26200 651 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Potri.007G007800 [exp] 394 / 1e-132 AT4G37770 749 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.002G113900 [exp] 394 / 1e-132 AT4G37770 682 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.014G012600 [exp] 393 / 5e-132 AT4G37770 755 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Potri.001G099400 [exp] 391 / 3e-131 AT4G11280 656 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.003G132300 [exp] 384 / 2e-128 AT4G11280 659 / 0.0 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6 (.1) Potri.002G163700 [exp] 384 / 3e-128 AT3G61510 684 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007021 [exp] 694 / 0 AT1G62960 612 / 0.0 ACC synthase 10 (.1) Lus10006676 [exp] 693 / 0 AT1G62960 620 / 0.0 ACC synthase 10 (.1) Lus10015023 [exp] 619 / 0 AT5G51690 704 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10038899 [exp] 616 / 0 AT5G51690 702 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 12 (.1) Lus10032695 [exp] 410 / 3e-139 AT4G26200 659 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10008579 [exp] 409 / 1e-138 AT4G26200 664 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 7 (.1) Lus10011565 [exp] 391 / 6e-131 AT4G37770 740 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007223 [exp] 380 / 8e-127 AT4G37770 747 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10039647 [exp] 378 / 9e-126 AT4G37770 739 / 0.0 1-amino-cyclopropane-1-carboxylate synthase 8 (.1) Lus10007910 [exp] 374 / 3e-124 AT3G61510 659 / 0.0 ARABIDOPSIS THALIANA 1-AMINOCYCLOPROPANE-1-CARBOXYLATE SYNTHASE 1, ACC synthase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.003G117700.1 pacid=42786926 polypeptide=Potri.003G117700.1.p locus=Potri.003G117700 ID=Potri.003G117700.1.v4.1 annot-version=v4.1 ATGACCCGAACCCTATTGTCTCGGACCCGGGCATCCCAACCCGACGAGGAAACGAAACAAACCACCACTATCAGCAGTGGAGGAACCGCCATGAGAGTTA TTGTTCCTTTACAAGGCGTTGTTCAGGGTAGAGGAGGTCTCTTTCTAGGCTCAGTAATACCCTGTGCTCTTTTCTACTTTCTCCAGCTTTATCTAAGAAG AAAACACCGTGATGACCCGAATGACCAGGATGACCCAGCAAGGGACCCGAATGCGCCGTCTCCTTCTGGGTCGGCGGGGAAGCTGGCCGAGCTCTCTGGG TTTCCTCGGAATTTGTCTAGAAACCTTCTATCACCGAGAACTCCGAGAGGACCTGTTTTCTTGTCGGGCCGGGCCAATGGAATAGTGAAGAGTGGGGACT CACCTTACTATGTTGGGTTGAAGAAAGTCCTGGAGGATCCATATGACGAAGCGGGCAATCCAAATGGGGTTATTCAGCTTGGTGTGGATGAGAACAAGTT AACGTTGGATTTGGTTAAGGAGTGGCTCGTAGAGAATGCAAAGGAAGCAATATTGGGTGGTGGTGGTGAAGGAGAGGAGTTGAGTATTAGTGGGATTGCT ACTTACCAGCCTTCTCATGGGCTTACGCAATTGAAAGTGGCTGTGGCAGGATTTATGTCTCAGATCATGGAAAATGCAGTTTCCTTCAATCCCTCTCTGA TGGTACTTACAGCTGGCGCAAACCCTGCAATTGAAATGCTTAGCTTCTGTCTAGCAGATTCTGGAAATGCATTTCTTGTGCCAACGCCATATTACCCAGG ATTTGACTGGGATGTAAAATGGAGAACAGGGGTGGAGATAATTCCTGTTCCTTGCCGCAGTGCTGACAACTTCAGTTTAAGTATAACTGCACTTGATCGA GGATTCAACCAGGCAAAGAAACGTGGTCTCAAAGTCCGTGGGATAATGATTTCAAACCCCTCAAATCCTGTTGGCAATCTGCTTAATCGTGAAACACTTT ATAGCCTTCTAAACTTTGCTAGAGAGAAGAACATACATATAGTGTCCAATGAAATATTTGCAGGGTCTACTCATGGGAGCGAGGAGTTTGCGAGCATGGC AGAACTCATTGATTCAGATTATCTTGACCGGGACAGGGTACATATAGTTTATGGTCTTTCAAAAGATCTCTCTCTTCCAGGTTTTAGGGTGGGTGTAATC TACTCCTTCAATGAAAATGTTCTAGCTGCTGCCAAAAAGTTGACAAGGTTTTCATCAGTTTCAGCTCCGACACAGCATCTACTTGTCTCTCTGCTTTCAG ATACTGACTTCGTTCAGAAGTTAATAAAGAATAACAGGGAGAGGCTTCAGAAAACGTATGCCACATTTGTGGCGGGGTTGAAGCAATTGGGCATTGAGTG CGCAAAGAGCAAAGGGGGCTTTTCCTGCTGGGCTGACATGAGTGAGTTAATCAACTCTTACAGTGAGAAAGGGGAGCTTGAGCTTTGGGACAAATTGTTG AATACAGCAAAGCTCAATGTTACTCCAGGATCTTGCTGTCGTTGTATTGAACCTGGATGGTTCCAATTCTGTTTTGCCAACTTGACTGAAAGGGACATTC CTGTAGTCATGGACCGAATTCTTAAAATGGTGAATGTCTGTAAAGCAAGCAGTTGA
AA sequence Show only first row Show all	>Potri.003G117700.1 pacid=42786926 polypeptide=Potri.003G117700.1.p locus=Potri.003G117700 ID=Potri.003G117700.1.v4.1 annot-version=v4.1 MTRTLLSRTRASQPDEETKQTTTISSGGTAMRVIVPLQGVVQGRGGLFLGSVIPCALFYFLQLYLRRKHRDDPNDQDDPARDPNAPSPSGSAGKLAELSG FPRNLSRNLLSPRTPRGPVFLSGRANGIVKSGDSPYYVGLKKVLEDPYDEAGNPNGVIQLGVDENKLTLDLVKEWLVENAKEAILGGGGEGEELSISGIA TYQPSHGLTQLKVAVAGFMSQIMENAVSFNPSLMVLTAGANPAIEMLSFCLADSGNAFLVPTPYYPGFDWDVKWRTGVEIIPVPCRSADNFSLSITALDR GFNQAKKRGLKVRGIMISNPSNPVGNLLNRETLYSLLNFAREKNIHIVSNEIFAGSTHGSEEFASMAELIDSDYLDRDRVHIVYGLSKDLSLPGFRVGVI YSFNENVLAAAKKLTRFSSVSAPTQHLLVSLLSDTDFVQKLIKNNRERLQKTYATFVAGLKQLGIECAKSKGGFSCWADMSELINSYSEKGELELWDKLL NTAKLNVTPGSCCRCIEPGWFQFCFANLTERDIPVVMDRILKMVNVCKASS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G62960		ACS10	ACC synthase 10 (.1)		Potri.003G117700 [exp]	0	1	Pt-ACS10.1
AT3G51880		AtHMGB1, NFD1, ...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.010G189900 [exp]	2.23	0.9569
AT4G25450		ABCB28, ATNAP8	ARABIDOPSIS THALIANA NON-INTRI...		Potri.015G136700 [exp]	4.89	0.9359	Pt-NAP8.1
AT3G21070		NADK1, ATNADK-1	NAD kinase 1 (.1.2)		Potri.001G256100 [exp]	5.47	0.9333
AT4G16330			2-oxoglutarate (2OG) and Fe(II...		Potri.011G024100 [exp]	6.16	0.9432
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	9.79	0.9239
AT1G07310			Calcium-dependent lipid-bindin...		Potri.009G043300 [exp]	11.95	0.8826
AT5G64290		DCT, DIT2.1	dicarboxylate transport 2.1 (....		Potri.017G050500 [exp]	13.26	0.9044
AT1G07040			unknown protein		Potri.008G194800 [exp]	15.90	0.9254
AT3G60590			unknown protein		Potri.014G061000 [exp]	16.43	0.9332
AT2G41000			Chaperone DnaJ-domain superfam...		Potri.006G024700 [exp]	17.97	0.9161

Compare expression of checked genes

Potri.003G117700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.