Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12500 503 / 6e-180 Nucleotide-sugar transporter family protein (.1) AT3G11320 367 / 3e-127 Nucleotide-sugar transporter family protein (.1) AT5G05820 366 / 1e-126 Nucleotide-sugar transporter family protein (.1) AT5G04160 346 / 9e-119 Nucleotide-sugar transporter family protein (.1) AT3G10290 340 / 1e-115 Nucleotide-sugar transporter family protein (.1) AT1G77610 154 / 7e-44 EamA-like transporter family protein (.1) AT1G21870 151 / 1e-42 GONST5 golgi nucleotide sugar transporter 5 (.1) AT4G32390 105 / 1e-25 Nucleotide-sugar transporter family protein (.1) AT5G25400 105 / 2e-25 Nucleotide-sugar transporter family protein (.1) AT5G11230 104 / 5e-25 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G114100 [exp] 608 / 0 AT1G12500 483 / 8e-172 Nucleotide-sugar transporter family protein (.1) Potri.008G063400 [exp] 370 / 2e-128 AT3G11320 566 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.001G247600 [exp] 367 / 3e-127 AT3G11320 476 / 4e-171 Nucleotide-sugar transporter family protein (.1) Potri.010G194100 [exp] 365 / 1e-126 AT3G11320 572 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.009G040800 [exp] 353 / 1e-121 AT5G05820 472 / 2e-169 Nucleotide-sugar transporter family protein (.1) Potri.016G043200 [exp] 349 / 4e-120 AT5G04160 512 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.006G046600 [exp] 324 / 3e-110 AT5G04160 503 / 0.0 Nucleotide-sugar transporter family protein (.1) Potri.005G177200 [exp] 155 / 3e-44 AT1G77610 561 / 0.0 EamA-like transporter family protein (.1) Potri.002G084500 [exp] 155 / 5e-44 AT1G77610 580 / 0.0 EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007029 [exp] 473 / 1e-168 AT1G12500 457 / 2e-162 Nucleotide-sugar transporter family protein (.1) Lus10006684 [exp] 442 / 4e-157 AT1G12500 439 / 2e-156 Nucleotide-sugar transporter family protein (.1) Lus10009878 [exp] 370 / 2e-128 AT3G11320 548 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10016446 [exp] 369 / 5e-128 AT5G05820 508 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10028255 [exp] 365 / 3e-126 AT3G11320 523 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10040234 [exp] 364 / 1e-125 AT3G11320 527 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10014832 [exp] 353 / 5e-121 AT3G11320 530 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10018043 [exp] 337 / 4e-115 AT3G10290 528 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10042039 [exp] 337 / 6e-115 AT3G10290 526 / 0.0 Nucleotide-sugar transporter family protein (.1) Lus10025645 [exp] 161 / 2e-46 AT1G21870 563 / 0.0 golgi nucleotide sugar transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF08449 [poplar] [flax] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Potri.003G118000.1 pacid=42786799 polypeptide=Potri.003G118000.1.p locus=Potri.003G118000 ID=Potri.003G118000.1.v4.1 annot-version=v4.1 ATGGTGGAGGCACAAAAATGGGCAACAAGGAGAATGAGCAACCCGAGAATAGTGGATGGCACCACCGTGTCAACCACCACCGATGACCAAGTTCTTGACA TACCAGCAACCCCACCTGGTGATGTAAGAAACAATGCATATTCCACCGTGGGATCATATTTCTCTCCAAATATTTTAACAGCTGCGATAATTGCATCATG GTACATGTCCAACATTGGTGTTTTGTTACTTAACAAGTACCTGTTAAGTTTTTATGGCTTCCGGTACCCAATATTCTTAACAATGCTGCACATGATTTCG TGTGCTTGTTATAGCTATGTGGCTATAAAGTTTCTTGAAATAGTACCGCTGCAGCATATTTTATCAAGGAAGCAGTTTATGAAGATCTTTGCTTTGAGTG CTATCTTTTGTTTTTCTGTGGTTTGTGGTAATACTTCATTGAGGTACTTGCCTGTGTCTTTTAATCAAGCTATTGGGGCAACTACACCATTTTTTACTGC TATTTTTGCGTTCTTGATAACGTGCAAGAAAGAATCTGCTGAGGTTTATTGCGCACTTTTGCCTGTGGTTTTTGGAATTGTTTTGGCCAGTAATAGTGAG CCTTTGTTTCATTTATTTGGGTTCTTGGTTTGTGTTGGTTCAACTGCTGGACGTGCTTTAAAATCCGTGGTTCAAGGGATTTTGCTAACATCAGAAGCTG AGAAGTTACATTCTATGAATTTGTTGCTTTATATGGCACCAATGGCTGCTTTGATTTTGTTACCGTTTACTCTTTACATTGAAGGGAATGTGGCTGCAAT TACCATTGAGAAAGCCAGTGGGGATCCGTTTATTGTGTTCTTGTTGGCTGGGAATGCAACTGTGGCTTATTTAGTGAATTTGACGAATTTTTTGGTGACC AGGCACACAAGTGCCCTGACTCTTCAAGTGTTAGGCAATGCTAAGGCTGCAGTGGCTGCTGTCATTTCAGTCTTGATCTTTAGGAATCCGGTGACTGTGA TGGGCATGGCTGGATTCGCGGTTACAATCATGGGTGTGGTGCTTTACAGCGAGGCAAAGAAGAGATCTAAGGTCACAACTCACTGA
AA sequence Show only first row Show all	>Potri.003G118000.1 pacid=42786799 polypeptide=Potri.003G118000.1.p locus=Potri.003G118000 ID=Potri.003G118000.1.v4.1 annot-version=v4.1 MVEAQKWATRRMSNPRIVDGTTVSTTTDDQVLDIPATPPGDVRNNAYSTVGSYFSPNILTAAIIASWYMSNIGVLLLNKYLLSFYGFRYPIFLTMLHMIS CACYSYVAIKFLEIVPLQHILSRKQFMKIFALSAIFCFSVVCGNTSLRYLPVSFNQAIGATTPFFTAIFAFLITCKKESAEVYCALLPVVFGIVLASNSE PLFHLFGFLVCVGSTAGRALKSVVQGILLTSEAEKLHSMNLLLYMAPMAALILLPFTLYIEGNVAAITIEKASGDPFIVFLLAGNATVAYLVNLTNFLVT RHTSALTLQVLGNAKAAVAAVISVLIFRNPVTVMGMAGFAVTIMGVVLYSEAKKRSKVTTH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12500			Nucleotide-sugar transporter f...		Potri.003G118000 [exp]	0	1
AT5G11890		EMB3135	EMBRYO DEFECTIVE 3135, unknown...		Potri.018G052500 [exp]	3.00	0.9296
AT5G12250		TUB6	beta-6 tubulin (.1)		Potri.006G035400 [exp]	4.69	0.9282	TUB17,TUB6.1
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Potri.005G061600 [exp]	7.93	0.9238
AT4G13940		MEE58, EMB1395,...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G320500 [exp]	8.24	0.9160	SAHH.1
AT3G57070			Glutaredoxin family protein (....		Potri.006G041800 [exp]	9.94	0.8547
AT5G35200			ENTH/ANTH/VHS superfamily prot...		Potri.018G125284 [exp]	11.22	0.9126
AT1G11860			Glycine cleavage T-protein fam...		Potri.004G009600 [exp]	11.31	0.9003	GDCST.2
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.009G152800 [exp]	12.00	0.9076
					Potri.011G057400 [exp]	13.85	0.9113
					Potri.006G056101 [exp]	14.07	0.9102

Compare expression of checked genes

Potri.003G118000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.