Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45550 437 / 1e-149 CYP76C4 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) AT3G61040 412 / 1e-139 CYP76C7 "cytochrome P450, family 76, subfamily C, polypeptide 7", cytochrome P450, family 76, subfamily C, polypeptide 7 (.1.2) AT2G45580 412 / 2e-139 CYP76C3 "cytochrome P450, family 76, subfamily C, polypeptide 3", cytochrome P450, family 76, subfamily C, polypeptide 3 (.1) AT2G45560 411 / 3e-139 CYP76C1 "cytochrome P450, family 76, subfamily C, polypeptide 1", cytochrome P450, family 76, subfamily C, polypeptide 1 (.1.2) AT1G33720 405 / 6e-137 CYP76C6 "cytochrome P450, family 76, subfamily C, polypeptide 6", cytochrome P450, family 76, subfamily C, polypeptide 6 (.1) AT2G45570 403 / 4e-136 CYP76C2 "cytochrome P450, family 76, subfamily C, polypeptide 2", cytochrome P450, family 76, subfamily C, polypeptide 2 (.1) AT3G52970 348 / 2e-114 CYP76G1 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) AT4G12300 336 / 7e-110 CYP706A4 "cytochrome P450, family 706, subfamily A, polypeptide 4", cytochrome P450, family 706, subfamily A, polypeptide 4 (.1) AT5G07990 333 / 9e-109 CYP75B1, D501, TT7 TRANSPARENT TESTA 7, CYTOCHROME P450 75B1, Cytochrome P450 superfamily protein (.1) AT4G12320 330 / 1e-107 CYP706A6 "cytochrome P450, family 706, subfamily A, polypeptide 6", cytochrome P450, family 706, subfamily A, polypeptide 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113900 [exp] 691 / 0 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150100 [exp] 486 / 6e-169 AT2G45550 510 / 3e-178 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150400 [exp] 473 / 6e-164 AT2G45550 495 / 2e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150300 [exp] 473 / 6e-164 AT2G45550 503 / 2e-175 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150200 [exp] 471 / 5e-163 AT2G45550 496 / 1e-172 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.002G150500 [exp] 471 / 8e-163 AT2G45550 497 / 5e-173 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Potri.006G094700 [exp] 369 / 5e-123 AT3G52970 459 / 4e-158 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029800 [exp] 364 / 2e-120 AT3G52970 626 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2) Potri.005G029700 [exp] 362 / 6e-120 AT3G52970 612 / 0.0 "cytochrome P450, family 76, subfamily G, polypeptide 1", cytochrome P450, family 76, subfamily G, polypeptide 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008936 [exp] 568 / 0 AT2G45550 499 / 6e-174 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008935 [exp] 547 / 0 AT2G45550 476 / 5e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028852 [exp] 545 / 0 AT2G45550 471 / 7e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008918 [exp] 539 / 0 AT2G45550 483 / 1e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028897 [exp] 538 / 0 AT2G45550 473 / 2e-163 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028898 [exp] 534 / 0 AT2G45550 488 / 1e-169 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10008917 [exp] 523 / 0 AT2G45550 479 / 8e-166 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10036079 [exp] 521 / 0 AT2G45550 481 / 5e-167 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028881 [exp] 518 / 0 AT2G45550 477 / 4e-165 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1) Lus10028896 [exp] 513 / 4e-179 AT2G45550 464 / 3e-160 "cytochrome P450, family 76, subfamily C, polypeptide 4", cytochrome P450, family 76, subfamily C, polypeptide 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.003G118200.1 pacid=42784666 polypeptide=Potri.003G118200.1.p locus=Potri.003G118200 ID=Potri.003G118200.1.v4.1 annot-version=v4.1 ATGAACTTCTTTATCAGTGTTTTGCTATACTTTCTTCTGACCTTTGCCGTTATTCAATCCCTTGATTATATTTTAAGAAGAAGCAAAAGAAAATCAGGCA AGCTTCCACCAGGTCCATCGCGTTTGCCAATTGTAGGGAACCTCTTGGATCTTGGTGATAAACCCCACAAGTCCTTGGCTAAGCTTGCCAAGACTCATGG CCAATTGATGAGTCTAAAACTTGGGCAAGTAACCACTATTGTAGTATCTTCAGCAACAATGGCCAAAGAAGTCCTCCAAAAGCACGACCTCACCTTCTGT AATCGGACCGTTGTCGATGCAGCTCGTGCTTTAGATCATCACGAAGCTGGTATAGCTTGGTTGCCAGTTGCAACGCGCTGGAGAAACCTTCGCAAGATAT GCAACTCCCATATTTTTACCTCCCAGAAGCTCGATGCGAACCAGGACCTTAGGCGTAAGAAAGTTCAAGATCTCCTAGCTGAGGTTCAAGAACGTTGCCT TGTAGGTGAGGCAGTGGACCTTCGCCAGGCTGCTTTCACAGCTACACTTAATGCATTGTCCAATACTGTTTTGTCGCTGGATTTGACCGATTTGAGCTCC GATATTGCAAGGGAGTTTAAGGAGCATATAAGCTGTATCATGGATGAGGCAGGAAAACCGAACTTGGTAGATTATTTCCCTTTACTCCGGAGGATTGATC CACAAGGTATAAGGCGTCGCACGGCAATTCATTTTGGAAAGGTATTTGATCTCTTCGATCGTTTAATCATTGAAAGGCTGCAGTTAAGAAAAGTGAAGGG CTATATCCCACTCGATGACATGTTAGATACTCTTCTCACAATCAGTGAAGTGAACAATGAAGAGATGGATGCAACTCGTATAAAGCACTTCTTTTTGGAT CTCTTCGGCGCTGGGACTGATACGACTTCAAGCACACTAGAATGGGCAATGGCAGAACTACTCCACAGTCCCAAGACTTTATTGAAAGCTCGAGCAGAGC TGGAGAGGACGATTGGCGAGGGAAACCTGCTTGAGGAATCAGATATCACTCGGTTACCTTACTTGCAAGCAGTTATTAAGGAAACTTTAAGGCTGCACCC AGCAGTTCCTTTCTTACTCCCTCACAAAGCAGGAGCAGATGCAGAAATAGGTGGCTTCACGGTCCCAAAAAATGCACAGGTACTGGTCAACGTCTGGGCC ATAGGGAGAGACCCAAGCATGTGGGAAGATCCAAACTCATTTGTTCCAGAGAGATTTTTGGAATCTGGTATTGATCACCGAGGCCAGAATTTTGAGTTTA TTCCATTTGGTAGCGGAAGGCGAATTTGCCCAGGATTACCATTGGCTATGAGAATGCTACCTTTGATGTTGGGTTCGCTTATTCTATCGTTTGACTGGAA GCTTGCAGATGGGGTCACGCCAGAGAACTTAAACATGGATGACAAGTTTGGCCTCACCTTGCTGAAGGCTCAACCACTGCGAGCCATTCCAATAACCAGA GAACTTAAACATGGATGA
AA sequence Show only first row Show all	>Potri.003G118200.1 pacid=42784666 polypeptide=Potri.003G118200.1.p locus=Potri.003G118200 ID=Potri.003G118200.1.v4.1 annot-version=v4.1 MNFFISVLLYFLLTFAVIQSLDYILRRSKRKSGKLPPGPSRLPIVGNLLDLGDKPHKSLAKLAKTHGQLMSLKLGQVTTIVVSSATMAKEVLQKHDLTFC NRTVVDAARALDHHEAGIAWLPVATRWRNLRKICNSHIFTSQKLDANQDLRRKKVQDLLAEVQERCLVGEAVDLRQAAFTATLNALSNTVLSLDLTDLSS DIAREFKEHISCIMDEAGKPNLVDYFPLLRRIDPQGIRRRTAIHFGKVFDLFDRLIIERLQLRKVKGYIPLDDMLDTLLTISEVNNEEMDATRIKHFFLD LFGAGTDTTSSTLEWAMAELLHSPKTLLKARAELERTIGEGNLLEESDITRLPYLQAVIKETLRLHPAVPFLLPHKAGADAEIGGFTVPKNAQVLVNVWA IGRDPSMWEDPNSFVPERFLESGIDHRGQNFEFIPFGSGRRICPGLPLAMRMLPLMLGSLILSFDWKLADGVTPENLNMDDKFGLTLLKAQPLRAIPITR ELKHG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Potri.003G118200 [exp]	0	1
AT3G45080			P-loop containing nucleoside t...		Potri.011G048700 [exp]	8.06	0.8954
AT1G61260			Protein of unknown function (D...		Potri.015G028700 [exp]	8.24	0.8367
					Potri.010G219300 [exp]	14.76	0.8750
AT1G10020			Protein of unknown function (D...		Potri.005G150100 [exp]	21.97	0.7773
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.005G035400 [exp]	24.08	0.8562
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	26.83	0.8556
AT2G42440	AS2		Lateral organ boundaries (LOB)...		Potri.002G041100 [exp]	28.14	0.8557
AT5G52060		ATBAG1	BCL-2-associated athanogene 1 ...		Potri.003G121500 [exp]	30.70	0.8331
AT1G18590		SOT17, ATSOT17,...	ARABIDOPSIS SULFOTRANSFERASE 5...		Potri.011G049100 [exp]	35.56	0.8540
AT5G07010		ATST2A	ARABIDOPSIS THALIANA SULFOTRAN...		Potri.003G193400 [exp]	42.62	0.8448

Compare expression of checked genes

Potri.003G118200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.