Plant FIBer expression Database

Potri.003G118300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G11980 411 / 2e-145 ATNUDX14, ATNUDT14 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14, nudix hydrolase homolog 14 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006685
[exp]
442 / 4e-158 AT4G11980 412 / 2e-146 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 14, nudix hydrolase homolog 14 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0261 NUDIX PF00293 NUDIX NUDIX domain
Representative CDS sequence
>Potri.003G118300.1 pacid=42786436 polypeptide=Potri.003G118300.1.p locus=Potri.003G118300 ID=Potri.003G118300.1.v4.1 annot-version=v4.1
ATGTCTCTCCTCAGAGTCCCAAAGCGCCTCCTTTTGGGGTCGTCTCTCTCACTCTCAATACTTAACCAAACCAGAAAACCAAGAAGACCCTTTTGTTTCA
ATATGTCATCCGAGTCATCTCAGCCCCTGACTCACTCACTCACCTTGCCAACACAACTCGGTCAACCCATTAAAATCATTGCTGCACCGGGTGTCTCTGA
TTCTCAGTTCAGGACTGCTATTGAATCTTCATTATTCAAGCAGTGGCTAAAAAACCTGGAATCTGAAAATGGGATATTAGCTACTGGGTCATTCTTATTA
AAACAAGTACTTGTTCAGGGAGTGGATATGTTTGGACAGCGAATCGGTTTTTTAAAATTCAAAGCAGATATTTTCGAAAAGGAGACTGGACAGAAGATTC
CAGGTATAGTGTTCGCACGAGGACCTGCTGTAACTGTGTTAATTCTTTTGAGCTCTGAGGGTGAGACCTATGCTGTTCTGACTGAACAGGTTAGGGTACC
CACAGGGAGGCTTGTTTTGGAATTGCCTGCTGGGATGCTGGATGCTGACAAGGGTGATTTTGTTGGGACAGCAGTTCGTGAGGTCGAAGAGGAGACTGGT
ATTCACTTGAAGCTCGGAGACATGGTTGACCTGACAGCCTTCCTGGACCCTTCTACTGGAGGCAGAGTTTTTCCTTCTCCTGGAGGATGTGATGAGGAGA
TCAGCGTGTTCCTTTATAGAGGATGCGTTGGTAAAGAAATTATCACAAAGCTGCAAGGAAAAGAGACTGGCCTCCGGGAACACGGCGAGTTGATCAAGGT
TCATGTAGTCCCATACAAGGAACTCTGGCGCATGACAGCTGATGCTAAGGTTTTAATGGCCATTGCTCTATATGAGATGGCTAAAGGAGGAGGACTCTTG
CCTCTTAAAAACTAA
AA sequence
>Potri.003G118300.1 pacid=42786436 polypeptide=Potri.003G118300.1.p locus=Potri.003G118300 ID=Potri.003G118300.1.v4.1 annot-version=v4.1
MSLLRVPKRLLLGSSLSLSILNQTRKPRRPFCFNMSSESSQPLTHSLTLPTQLGQPIKIIAAPGVSDSQFRTAIESSLFKQWLKNLESENGILATGSFLL
KQVLVQGVDMFGQRIGFLKFKADIFEKETGQKIPGIVFARGPAVTVLILLSSEGETYAVLTEQVRVPTGRLVLELPAGMLDADKGDFVGTAVREVEEETG
IHLKLGDMVDLTAFLDPSTGGRVFPSPGGCDEEISVFLYRGCVGKEIITKLQGKETGLREHGELIKVHVVPYKELWRMTADAKVLMAIALYEMAKGGGLL
PLKN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G11980 ATNUDX14, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.003G118300
[exp]
0 1
AT2G27490 ATCOAE dephospho-CoA kinase family (.... Potri.008G053601
[exp]
1.41 0.9063
AT4G13010 Oxidoreductase, zinc-binding d... Potri.001G343000
[exp]
2.44 0.8986
AT1G04950 EMB2781, ATTAF6... TBP-associated factor 6, EMBRY... Potri.001G359400
[exp]
2.82 0.8896
AT4G12760 unknown protein Potri.014G197700
[exp]
3.00 0.8956
AT3G15351 unknown protein Potri.002G142000
[exp]
5.47 0.8828
AT3G18140 Transducin/WD40 repeat-like su... Potri.016G052800
[exp]
6.48 0.8633
AT1G14685 BBR_BPC BBR/BPC2, ATBPC... basic pentacysteine 2 (.1.2.3) Potri.015G032900
[exp]
6.48 0.8694 Pt-GBP.7
AT4G16520 ATG8F autophagy 8f, Ubiquitin-like s... Potri.001G122700
[exp]
8.77 0.8507
AT5G47760 ATPK5, ATPGLP2 2-phosphoglycolate phosphatase... Potri.016G004200
[exp]
9.53 0.8491
AT3G15750 Essential protein Yae1, N-term... Potri.001G024000
[exp]
10.95 0.8478

Potri.003G118300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.