Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12520 393 / 6e-138 ATCCS, CCS1 copper chaperone for SOD1 (.1.2.3) AT2G28190 61 / 2e-10 CZSOD2, CSD2 copper/zinc superoxide dismutase 2 (.1) AT1G08830 57 / 9e-10 CSD1 copper/zinc superoxide dismutase 1 (.1.2) AT5G18100 57 / 1e-09 CSD3 copper/zinc superoxide dismutase 3 (.1.2) AT1G06330 50 / 2e-07 Heavy metal transport/detoxification superfamily protein (.1) AT3G56891 50 / 3e-07 Heavy metal transport/detoxification superfamily protein (.1) AT3G02960 49 / 2e-06 Heavy metal transport/detoxification superfamily protein (.1) AT2G36950 45 / 4e-05 Heavy metal transport/detoxification superfamily protein (.1) AT1G29100 43 / 4e-05 Heavy metal transport/detoxification superfamily protein (.1) AT4G10465 43 / 0.0001 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113800 [exp] 494 / 1e-177 AT1G12520 377 / 2e-131 copper chaperone for SOD1 (.1.2.3) Potri.005G044400 [exp] 57 / 5e-10 AT1G08830 266 / 5e-93 copper/zinc superoxide dismutase 1 (.1.2) Potri.004G216700 [exp] 58 / 1e-09 AT2G28190 267 / 2e-91 copper/zinc superoxide dismutase 2 (.1) Potri.011G065600 [exp] 56 / 2e-09 AT1G06330 159 / 7e-51 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G005100 [exp] 57 / 3e-09 AT2G28190 252 / 2e-85 copper/zinc superoxide dismutase 2 (.1) Potri.013G031100 [exp] 53 / 2e-08 AT1G08830 261 / 6e-91 copper/zinc superoxide dismutase 1 (.1.2) Potri.019G106500 [exp] 50 / 2e-07 AT1G06330 217 / 1e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.019G035800 [exp] 50 / 3e-07 AT5G18100 237 / 3e-81 copper/zinc superoxide dismutase 3 (.1.2) Potri.013G056900 [exp] 49 / 6e-07 AT5G18100 239 / 4e-82 copper/zinc superoxide dismutase 3 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007031 [exp] 454 / 1e-161 AT1G12520 399 / 5e-140 copper chaperone for SOD1 (.1.2.3) Lus10006686 [exp] 442 / 4e-157 AT1G12520 393 / 6e-138 copper chaperone for SOD1 (.1.2.3) Lus10001719 [exp] 59 / 1e-09 AT1G08830 250 / 6e-85 copper/zinc superoxide dismutase 1 (.1.2) Lus10004139 [exp] 56 / 1e-09 AT1G08830 253 / 4e-88 copper/zinc superoxide dismutase 1 (.1.2) Lus10010651 [exp] 58 / 3e-09 AT5G18100 228 / 9e-75 copper/zinc superoxide dismutase 3 (.1.2) Lus10016155 [exp] 57 / 3e-09 AT2G28190 308 / 1e-107 copper/zinc superoxide dismutase 2 (.1) Lus10021410 [exp] 54 / 2e-08 AT2G28190 306 / 5e-107 copper/zinc superoxide dismutase 2 (.1) Lus10013615 [exp] 48 / 4e-06 AT5G18100 209 / 7e-68 copper/zinc superoxide dismutase 3 (.1.2) Lus10019676 [exp] 44 / 4e-05 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1) Lus10016436 [exp] 44 / 4e-05 AT4G39700 209 / 1e-70 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00080 [poplar] [flax] Sod_Cu Copper/zinc superoxide dismutase (SODC) PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.003G118400.1 pacid=42785068 polypeptide=Potri.003G118400.1.p locus=Potri.003G118400 ID=Potri.003G118400.1.v4.1 annot-version=v4.1 ATGGCATTTCTCAGGTCAGTAACAACCACAACAAAGACTGCTATAGCTGCCTTGGCTTTGCCTGCTGCCTTCGCTTTCTCATCTCTCTCCCCTTCTTCTC CAAATCCCAAACCCGAAAACCTCTTTTTCCTCTCACCATCATCTTCTCTTCTCACGTCAGCTCGCTTTGGTCTTGTAAAGAATTTGACCCAGCGTCCTTC TTCCCTTAGCATGGACACGTCAACATCAAATCAAAAACCCATCTCACAGGATAATGGAGCCTTGCCTGAGATACTTACAGAATTCATGGTGGATATGAAG TGTGAGGGTTGTGTTAATTCTGTCAGGAATAAGTTACAAGCTGTTAATGGAGTGAAGAATGTGGAGGTTGATTTGGCCAATCAAGTGGTAAGAATTCTTG GGTCTTCTCCAGTGAAGACTATGACTGAAGCTTTGGAGCAGACAGGTCGAAATGCTAGACTAATTGGCCAAGGAATCCCTGAAGACTTTTTGGTGTCTGC TGCTGTTGCCGAATTCAAAGGTCCAGATATTTTTGGTGTTGTTCGCTTCGCTCAAGTGAATATGGAACTGGCTAGGATTGAAGCCAGCTTTAGTGGAGTG TCACCTGGTAAACATGGTTGGTCTATCAATGAGTTTGGTGATCTAACAAAAGGAGCGGCAAGCACTGGGAAAGTGTTTAATCCAACAAATCAAGGAACTG AACAAGAGCCACTTGGCGACCTGGGAACATTAGATGTTGATGAGAAAGGAGATGCCTTCTTCTCGGGGACCAAACGGAAGCTAAGAGTTGCAGATCTGAT TGGGAGATCAGTAGTGTTATTTGGAACTGAAGATAAATCAGATGAAGGTCTCACAGCAGCAGTAATTGCCAGAAGTGCAGGAGTTGGTGAAAATTACAAA AAGATATGCACATGTGATGGGACGATTATATGGGAATCAAGTAATAACGATTTTGTTGCCAGTAAAGTTTGA
AA sequence Show only first row Show all	>Potri.003G118400.1 pacid=42785068 polypeptide=Potri.003G118400.1.p locus=Potri.003G118400 ID=Potri.003G118400.1.v4.1 annot-version=v4.1 MAFLRSVTTTTKTAIAALALPAAFAFSSLSPSSPNPKPENLFFLSPSSSLLTSARFGLVKNLTQRPSSLSMDTSTSNQKPISQDNGALPEILTEFMVDMK CEGCVNSVRNKLQAVNGVKNVEVDLANQVVRILGSSPVKTMTEALEQTGRNARLIGQGIPEDFLVSAAVAEFKGPDIFGVVRFAQVNMELARIEASFSGV SPGKHGWSINEFGDLTKGAASTGKVFNPTNQGTEQEPLGDLGTLDVDEKGDAFFSGTKRKLRVADLIGRSVVLFGTEDKSDEGLTAAVIARSAGVGENYK KICTCDGTIIWESSNNDFVASKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12520		ATCCS, CCS1	copper chaperone for SOD1 (.1....		Potri.003G118400 [exp]	0	1
AT1G08830		CSD1	copper/zinc superoxide dismuta...		Potri.013G031100 [exp]	1.41	0.8153	CUZN-SOD.2
AT2G32520			alpha/beta-Hydrolases superfam...		Potri.014G155200 [exp]	3.46	0.7857
AT3G21090		ABCG15	ATP-binding cassette G15, ABC-...		Potri.001G255900 [exp]	11.87	0.8233
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.010G179400 [exp]	16.43	0.7533
					Potri.006G229100 [exp]	24.89	0.7841
AT2G38695			unknown protein		Potri.003G190101 [exp]	29.52	0.7181
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.003G162801 [exp]	35.21	0.7408
AT1G74520		ATHVA22A	HVA22 homologue A (.1)		Potri.012G069300 [exp]	36.66	0.7647	ATHVA22.1
AT3G03310		ATLCAT3	ARABIDOPSIS LECITHIN:CHOLESTER...		Potri.008G076300 [exp]	40.64	0.7128
AT3G07230			wound-responsive protein-relat...		Potri.014G191300 [exp]	41.46	0.7789

Compare expression of checked genes

Potri.003G118400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.