Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04110 586 / 0 SDD1 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) AT3G14067 580 / 0 Subtilase family protein (.1) AT5G67360 560 / 0 ARA12 Subtilase family protein (.1) AT4G34980 553 / 0 SLP2 subtilisin-like serine protease 2 (.1) AT1G01900 552 / 0 SBTI1.1, ATSBT1.1 subtilase family protein (.1) AT2G05920 551 / 0 Subtilase family protein (.1) AT3G14240 547 / 0 Subtilase family protein (.1) AT5G51750 516 / 5e-173 ATSBT1.3 subtilase 1.3 (.1) AT2G04160 503 / 4e-168 AIR3 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) AT5G59810 500 / 7e-167 ATSBT5.4 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113700 [exp] 964 / 0 AT1G04110 538 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118500 [exp] 943 / 0 AT1G04110 557 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G118800 [exp] 937 / 0 AT1G04110 585 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.019G006570 [exp] 928 / 0 AT1G04110 568 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G074600 [exp] 614 / 0 AT1G01900 788 / 0.0 subtilase family protein (.1) Potri.002G256300 [exp] 590 / 0 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.003G067000 [exp] 577 / 0 AT3G14067 969 / 0.0 Subtilase family protein (.1) Potri.001G167300 [exp] 567 / 0 AT3G14067 978 / 0.0 Subtilase family protein (.1) Potri.004G173900 [exp] 565 / 0 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028893 [exp] 832 / 0 AT1G04110 580 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10002995 [exp] 824 / 0 AT1G04110 584 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007036 [exp] 824 / 0 AT5G67360 564 / 0.0 Subtilase family protein (.1) Lus10007045 [exp] 822 / 0 AT1G04110 603 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10007033 [exp] 820 / 0 AT5G67360 551 / 0.0 Subtilase family protein (.1) Lus10008919 [exp] 819 / 0 AT5G67360 561 / 0.0 Subtilase family protein (.1) Lus10007044 [exp] 818 / 0 AT1G04110 590 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10006689 [exp] 813 / 0 AT2G05920 563 / 0.0 Subtilase family protein (.1) Lus10029570 [exp] 813 / 0 AT5G67360 550 / 0.0 Subtilase family protein (.1) Lus10029575 [exp] 812 / 0 AT5G67360 552 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.003G118700.1 pacid=42784623 polypeptide=Potri.003G118700.1.p locus=Potri.003G118700 ID=Potri.003G118700.1.v4.1 annot-version=v4.1 ATGGAGAACAATAGGTCTGAACTGTTGCCAACTATGGTGATTGTCTTTCTTGTTGGCTTCATCTCCATGTTTAGCTCTCAAGCATACACTGATGAAGGGA AACCACTAAGAACTTCGGAGACTAGTCAAAAAGGCAAATTTGAAACTTACATTGTCTTTGTACAGAAGCCAGAGGAGGGAGTTTCTGCTGATGACCTGGA CAGCTGGTACAAGTCATTTTTACCAGTTACAATTCCAAGTTCAAACCACCAGGAACGCATGGTGTATTCTTACAGACATGTCGCCACTGGGTTTGCTGCA AAACTAACCGCAGAAGAAGCAAAAGCTATGGAAGATAAGGATGGGTTTTTGTCTGCAAAGCCCCAAAAGATATTATCTCTACATACAACTCACAGTCCAA ACTTCTTGGGGTTGCAAAAAAATTTAGGATTTTGGAGAAACTCAACTTACGGAAAGGGAGTGATTATTGGGGTTTTGGACACTGGAATATCTCCGGATCA CCCTTCATTCAGTGATGAAGGAGTGCCTCCTCCACCAACCAAATGGAAAGGGAAATGTAACTTCAACGGAACTGTGTGTAACAACAAACTTATTGGTGCA AGAGATTTTACTTCATCGAAAGCTGCACCACCATTCGATGAAGAAGGCCATGGGACTCACACGGCCAGCACAGCAGCTGGAAATTTTGTAAATGATGCCA GTGTGTTTGGCAATGCTAATGGCACAGCAGTTGGTATGGCGCCTCTGGCTCACCTGGCCATTTACAAAGTCTGCTCTGATTTTGGTTGTGCAGACAGTGA TATATTGGCTGCAATGGATGCTGCTGTTGAGGATGGTGTGGATGTGCTTTCGCTTTCCCTTGGTGGTGGCTCAGCGCCTTTTTTTGAAGATTCAATTGCA GTGGGAGCTTTTGGAGCAACTCAGAAGGGAATTTTCGTTAGTTGTTCAGCAGGGAATGAAGGTCCATATAATGGTTCTTTATCAAATGAGGCCCCGTGGA TTCTCACTGTTGGAGCAAGCACCATTGATAGAAGCATAAGAGCAGATGTGTTGCTTGGGAATTCCAATCATTTTTTTGGCGAATCCCTCTTCCAGTCAAA TTCACCTCCATATATGAGTCTTGTTTATGCAGGTGCTCATGGTTCTCAATCAGCAGCATTTTGTGCACCAGAATCATTGACAGATATAGATGTCAAAGGC AAGATAGTTCTTTGTGAGAGAGGTGGTGGGATAGCAAGAATTGACAAGGGACAAGCTGTGAAGGATGCCGGTGGTGCTGCTATGATTCTTATGAATGACA AGGATAGTGGCTATAGCACCTTAGCAGATGCTCATGTACTTCCTGCATCACATGTGAGTTACTCAGCTGGGTTGAGCATCAAAGCCTACATAAACTCAAC ACAAGTTCCAACAGCTACAATCATGTTTCTTGGAACTAAAATTGGTGATAAAACTGCTCCGACGGTTGCTTCATTTTCCTCTAGAGGCCCAAGCTTGGCA AGCCCAGGCATATTGAAACCCGATATTATTGGCCCTGGCGTGAGCATTCTAGCAGCATGGCCAGTTTCTGTGGAGAACAAGACAGATACGAAGTCCACAT TTAACATTATCTCAGGCACCTCAATGTCTTGCCCACATCTGAGTGGCATTGCTGCTCTGCTGAAAAGTGCCCACCCTGACTGGTCTCCTGCTGCCATCAA ATCTGCTATCATGACTACTGCTGATTTAGTAAACCTTGGCAACCAGCCAATTCTGGACGAGAGGCTTTTACCTGCTGATATATTGGCCACTGGAGCAGGC CAAGTTAACCCATCAAAAGCAAGTGATCCTGGTCTTGTTTATGATATCCAGCCTGATGATTACATCCCTTACCTATGTGGCTTGGGTTACCCAGACAAAG ACATAAGCTACATTGTGCAGCGCCAAGTCAACTGCTCAGAAGAGTCAAGCATACTAGAAGCACAACTGAATTATCCTTCCTTTTCAATCGTGTATGGGCC TAATCCCGCAACTCAGACCTATACCAGAACGGTAACAAATGTTGGCCCTCCCAACTCATCTTACACTGCCTTCGTCGATCCACCACCAGGGGTAAATGTT ACCGTGACACCTAAAAACATTATATTCACTAACACAGAACAGACTGCAACATACTCTGTGACTTTTACTGCAACATCTGAGTCAAACAATGATCCAATAG GTCAAGGATATATCAGGTGGGTTTCAGATAAGCATTCAATTAGAAGCCAAATATTGGTTTCTTTCTCCAATGAAGATTAG
AA sequence Show only first row Show all	>Potri.003G118700.1 pacid=42784623 polypeptide=Potri.003G118700.1.p locus=Potri.003G118700 ID=Potri.003G118700.1.v4.1 annot-version=v4.1 MENNRSELLPTMVIVFLVGFISMFSSQAYTDEGKPLRTSETSQKGKFETYIVFVQKPEEGVSADDLDSWYKSFLPVTIPSSNHQERMVYSYRHVATGFAA KLTAEEAKAMEDKDGFLSAKPQKILSLHTTHSPNFLGLQKNLGFWRNSTYGKGVIIGVLDTGISPDHPSFSDEGVPPPPTKWKGKCNFNGTVCNNKLIGA RDFTSSKAAPPFDEEGHGTHTASTAAGNFVNDASVFGNANGTAVGMAPLAHLAIYKVCSDFGCADSDILAAMDAAVEDGVDVLSLSLGGGSAPFFEDSIA VGAFGATQKGIFVSCSAGNEGPYNGSLSNEAPWILTVGASTIDRSIRADVLLGNSNHFFGESLFQSNSPPYMSLVYAGAHGSQSAAFCAPESLTDIDVKG KIVLCERGGGIARIDKGQAVKDAGGAAMILMNDKDSGYSTLADAHVLPASHVSYSAGLSIKAYINSTQVPTATIMFLGTKIGDKTAPTVASFSSRGPSLA SPGILKPDIIGPGVSILAAWPVSVENKTDTKSTFNIISGTSMSCPHLSGIAALLKSAHPDWSPAAIKSAIMTTADLVNLGNQPILDERLLPADILATGAG QVNPSKASDPGLVYDIQPDDYIPYLCGLGYPDKDISYIVQRQVNCSEESSILEAQLNYPSFSIVYGPNPATQTYTRTVTNVGPPNSSYTAFVDPPPGVNV TVTPKNIIFTNTEQTATYSVTFTATSESNNDPIGQGYIRWVSDKHSIRSQILVSFSNED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118700 [exp]	0	1
					Potri.014G081800 [exp]	3.46	0.9977
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	3.60	0.9981	PtrAMT4-2
					Potri.002G158700 [exp]	7.34	0.9977
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.010G104800 [exp]	7.48	0.9975
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.008G032200 [exp]	8.94	0.9973
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.004G080400 [exp]	8.94	0.9970
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191450 [exp]	9.38	0.9972
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.011G064900 [exp]	9.79	0.9973
AT1G59740			Major facilitator superfamily ...		Potri.004G064100 [exp]	11.53	0.9972
					Potri.003G126200 [exp]	13.26	0.9969

Compare expression of checked genes

Potri.003G118700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.