Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12530 159 / 1e-48 unknown protein AT1G56420 84 / 9e-20 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G009100 [exp] 90 / 1e-21 AT1G56420 206 / 8e-68 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006705 [exp] 218 / 5e-70 AT1G12530 144 / 2e-42 unknown protein Lus10007047 [exp] 211 / 3e-68 AT1G12530 146 / 6e-44 unknown protein Lus10031412 [exp] 86 / 4e-20 AT1G56420 204 / 2e-67 unknown protein Lus10010921 [exp] 85 / 1e-19 AT1G56420 209 / 4e-69 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G118900.1 pacid=42787244 polypeptide=Potri.003G118900.1.p locus=Potri.003G118900 ID=Potri.003G118900.1.v4.1 annot-version=v4.1 ATGTGGAGTCAGAAAAGCAGAGAAGAGAGGAAGGAAATAAGAGGAGAGCGGGTCATGGAGAGCAACAAAAAGAAGAGAACATCATCATCATCATCAACAA CAACAACAGTAAGCAAAGAGGAGGTAATAGCCAAACTGAAAGACGATGGTGACTTCGACAATCTCCGTCTCAACATCATCCGCAAGCTCAAAGACAATGA AGAGTTGCGCAACAACATTATTTCCATTGTGAGACATTCAGCAACACTTAATCGTGCTGGTGCTGAAAGTATGAAACCCCGACAGCTTTTTGATGCCTTA TACGATGAGGTTGGGAACAAACTGACGAGCCAAATTTCTGATGGTGTATGGGAAGTCATTAGATCAGCTGATGGAATGAAAAATGAAATCACAGAGACAG TGCAATCTGTCTATAATAAATTGGTCAACCCTGAAAGGAAGGATGACGGTGAATCATCTACTCATGGTGCAATGGTAGTTGAGAATGGAACTAACTATAA AGGTCTGGTAAAGGCATCAGCTGTATCAATGGATGATAACTTGTCTAGTGACCCAAAAGAACCACCAGGCTTCTCTCTATCAAACAATCATCAGAACAGT AACCATGAAAAGAGAGAACAGCTGCAGCTGCCTATGCCATGTGAAGGTCCTCCAGAAGCAAAGAAGAAAAGGCCCAACCATTCAGAGGACATGCTGAAGG TGAATGATGTTGATCTTGCCCCACCAGGCTTTTCTGCAGACGTTGAGCCAAAGGAGCCCTGTGACAGCAGTGATGAAGACCCTGATGTGCCTCCTGGATT TGGTTGA
AA sequence Show only first row Show all	>Potri.003G118900.1 pacid=42787244 polypeptide=Potri.003G118900.1.p locus=Potri.003G118900 ID=Potri.003G118900.1.v4.1 annot-version=v4.1 MWSQKSREERKEIRGERVMESNKKKRTSSSSSTTTTVSKEEVIAKLKDDGDFDNLRLNIIRKLKDNEELRNNIISIVRHSATLNRAGAESMKPRQLFDAL YDEVGNKLTSQISDGVWEVIRSADGMKNEITETVQSVYNKLVNPERKDDGESSTHGAMVVENGTNYKGLVKASAVSMDDNLSSDPKEPPGFSLSNNHQNS NHEKREQLQLPMPCEGPPEAKKKRPNHSEDMLKVNDVDLAPPGFSADVEPKEPCDSSDEDPDVPPGFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12530			unknown protein		Potri.003G118900 [exp]	0	1
AT3G10760	GARP		Homeodomain-like superfamily p...		Potri.006G034900 [exp]	1.41	0.8778
AT2G41750			DTW domain-containing protein ...		Potri.006G051600 [exp]	15.74	0.7467
AT5G56740		HAG02, HAC7, HA...	histone acetyltransferase of t...		Potri.013G068200 [exp]	17.32	0.7903
AT1G09520			unknown protein		Potri.010G002200 [exp]	24.33	0.8101
AT3G04470			Ankyrin repeat family protein ...		Potri.013G047500 [exp]	24.65	0.7741
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Potri.006G109300 [exp]	32.86	0.7759
AT4G24210		SLY1	SLEEPY1, F-box family protein ...		Potri.014G022100 [exp]	47.11	0.7870
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Potri.007G130300 [exp]	47.60	0.7811
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.008G074033 [exp]	50.37	0.7671
AT3G56110		PRA1.B1	prenylated RAB acceptor 1.B1 (...		Potri.008G074000 [exp]	52.15	0.7593

Compare expression of checked genes

Potri.003G118900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.