Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45630 327 / 1e-111 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G12550 323 / 3e-110 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G79870 238 / 5e-77 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT5G28310 115 / 3e-30 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G17745 94 / 6e-21 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 93 / 1e-20 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT5G14780 90 / 7e-20 FDH formate dehydrogenase (.1) AT1G72190 88 / 3e-19 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT3G19480 86 / 3e-18 D-3-phosphoglycerate dehydrogenase (.1) AT1G68010 84 / 8e-18 ATHPR1, HPR hydroxypyruvate reductase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113250 [exp] 511 / 0 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Potri.002G151100 [exp] 332 / 2e-113 AT2G45630 400 / 3e-140 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.002G151200 [exp] 327 / 2e-111 AT2G45630 382 / 3e-133 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073500 [exp] 325 / 9e-111 AT2G45630 377 / 4e-131 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G073400 [exp] 324 / 8e-110 AT2G45630 405 / 2e-141 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G183700 [exp] 247 / 2e-80 AT1G79870 404 / 3e-142 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.003G052700 [exp] 246 / 5e-80 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.014G161300 [exp] 95 / 1e-21 AT5G14780 581 / 0.0 formate dehydrogenase (.1) Potri.010G249600 [exp] 94 / 7e-21 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006708 [exp] 335 / 8e-115 AT1G12550 358 / 4e-124 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10036537 [exp] 334 / 4e-114 AT2G45630 384 / 8e-134 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10014133 [exp] 328 / 5e-112 AT1G12550 340 / 1e-116 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) Lus10041393 [exp] 325 / 2e-110 AT2G45630 392 / 7e-137 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 253 / 8e-83 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 252 / 4e-82 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10037552 [exp] 247 / 2e-80 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025795 [exp] 244 / 4e-79 AT1G79870 438 / 6e-156 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035867 [exp] 239 / 3e-77 AT1G79870 431 / 8e-153 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10041391 [exp] 135 / 3e-39 AT1G12550 131 / 3e-38 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0325 [poplar] [flax] Form_Glyc_dh PF00389 [poplar] [flax] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL0063 [poplar] [flax] NADP_Rossmann PF02826 [poplar] [flax] 2-Hacid_dh_C D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G119000.1 pacid=42787159 polypeptide=Potri.003G119000.1.p locus=Potri.003G119000 ID=Potri.003G119000.1.v4.1 annot-version=v4.1 ATGGCTTCATACGCAAATCAAGAATGCTTTCAGTCAAATGACGACCTCCCCATAGTCCTCCTGCATCGTCTCCCTTCATTCAACTCGCCACTGAAAGACA TCCTACAGCCTCACTTCCACCTCCTCGATCCAGCTGATTCACCTGAACCTGCTAGCTCCTTCCTCTCCTGCCATGCAAAATCTGTTAGAGCTCTCATCTG CATCTACAATACTCCCCTGAGTGCAGAAACCCTCAATCTCCTTCCTTCTTTGGAGCTCATAGTGGCAGCCAGTGCTGGCGTTGACCACATTGATCTAGAG GAATGTCGATGCCGTGGAATTATTATGACTAATGCCAGCACAGCATTTGCGGAGGATGCTGCAGACCATGCCGTGGCACTGTTGATTGACGTTTGCCGTA GAATATCTACTGGTGACCGGTTCGTTCGTGCCGGCTTGTGGCCAGTTAAGAGAGACTGTTCACTTGGTTTCAAGATGGGAAGAAAACGAGTTGGGATAGT TGGACTGGGAAGAATTGGATTTGAAGTAGGAAAAAGACTTGAGGCTTTTGGCTGTAGCATCGCTTACAACTCACGAAAGAAGAAGCCATCAGTTCCATTT TCTTACCATGCTAATGTCCTTGACCTTGCAGAAGACAGTGATGCTCTCATTCTTTGTTGTTCACTGACAGAACAAACTCACCATATAATCAACAAGGATG TGTTAGAAGCGCTGGGAAAGGAAGGGGTGATCATCAATGTTGGACGCGGAGCTCTCATTGATGAAAAGGTGTTGGTGCAGTTTTTGTTGAGGGGAGATAT TGGTGGCGCCGGCCTTGATGTGTTTGAGAATGAGCCTGATGTTCCCAGAGAGCTATTTGAACTTGATAATGTAGTTCTGTCTCCACACCGTGCTATTTTC ACCTCAGAATCACTTGAAGCATTACATGAACTAGTTTTCACCAACTTAAAGGCCTTCTTTTCAAATAAACCTTTGCAATCAGTCTTTCAGATTGAATGA
AA sequence Show only first row Show all	>Potri.003G119000.1 pacid=42787159 polypeptide=Potri.003G119000.1.p locus=Potri.003G119000 ID=Potri.003G119000.1.v4.1 annot-version=v4.1 MASYANQECFQSNDDLPIVLLHRLPSFNSPLKDILQPHFHLLDPADSPEPASSFLSCHAKSVRALICIYNTPLSAETLNLLPSLELIVAASAGVDHIDLE ECRCRGIIMTNASTAFAEDAADHAVALLIDVCRRISTGDRFVRAGLWPVKRDCSLGFKMGRKRVGIVGLGRIGFEVGKRLEAFGCSIAYNSRKKKPSVPF SYHANVLDLAEDSDALILCCSLTEQTHHIINKDVLEALGKEGVIINVGRGALIDEKVLVQFLLRGDIGGAGLDVFENEPDVPRELFELDNVVLSPHRAIF TSESLEALHELVFTNLKAFFSNKPLQSVFQIE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45630			D-isomer specific 2-hydroxyaci...		Potri.003G119000 [exp]	0	1
AT1G67750			Pectate lyase family protein (...		Potri.010G051800 [exp]	1.41	0.8085
AT5G08530		CI51	51 kDa subunit of complex I (....		Potri.008G177801 [exp]	2.00	0.7518
AT2G04032		ZIP7	zinc transporter 7 precursor (...		Potri.010G134300 [exp]	16.43	0.7385	Pt-ZIP7.2
					Potri.011G041124 [exp]	21.07	0.7158
AT1G05410			Protein of unknown function (D...		Potri.010G086600 [exp]	25.09	0.7139
AT1G64295			F-box associated ubiquitinatio...		Potri.001G462650 [exp]	30.29	0.6192
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Potri.003G126300 [exp]	32.75	0.6876
					Potri.003G206401 [exp]	34.69	0.6453
AT2G17070			Arabidopsis protein of unknown...		Potri.009G142500 [exp]	44.27	0.6892
AT1G51510		Y14	RNA-binding (RRM/RBD/RNP motif...		Potri.006G048300 [exp]	63.35	0.7064

Compare expression of checked genes

Potri.003G119000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.