Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ANS.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22880 530 / 0 TT18, TDS4, ANS, LDOX TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) AT5G08640 257 / 2e-83 ATFLS1, FLS flavonol synthase 1 (.1.2) AT3G11180 228 / 3e-71 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT5G05600 224 / 4e-70 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G38240 215 / 6e-67 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT4G16330 200 / 5e-61 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT3G55970 199 / 1e-60 ATJRG21 jasmonate-regulated gene 21 (.1) AT5G63590 196 / 2e-60 ATFLS3, FLS3, FLS flavonol synthase 3 (.1) AT4G22870 187 / 2e-59 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G17020 194 / 8e-59 ATSRG1, SRG1 senescence-related gene 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113100 [exp] 613 / 0 AT4G22880 530 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Potri.019G014454 [exp] 268 / 1e-87 AT5G08640 454 / 1e-161 flavonol synthase 1 (.1.2) Potri.004G139600 [exp] 250 / 8e-81 AT5G08640 470 / 7e-168 flavonol synthase 1 (.1.2) Potri.004G139700 [exp] 240 / 7e-77 AT5G08640 446 / 3e-158 flavonol synthase 1 (.1.2) Potri.016G117100 [exp] 239 / 4e-76 AT5G05600 491 / 4e-175 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.006G101100 [exp] 236 / 3e-75 AT5G05600 462 / 1e-163 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G086700 [exp] 232 / 6e-74 AT5G08640 432 / 9e-153 flavonol synthase 1 (.1.2) Potri.008G069300 [exp] 229 / 2e-72 AT5G05600 528 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G188000 [exp] 221 / 4e-69 AT5G05600 511 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006709 [exp] 553 / 0 AT4G22880 573 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10014134 [exp] 536 / 0 AT4G22880 559 / 0.0 TANNIN DEFICIENT SEED 4, ANTHOCYANIDIN SYNTHASE, leucoanthocyanidin dioxygenase (.1.2) Lus10025619 [exp] 260 / 1e-84 AT5G08640 349 / 5e-120 flavonol synthase 1 (.1.2) Lus10028068 [exp] 244 / 2e-78 AT5G08640 429 / 1e-151 flavonol synthase 1 (.1.2) Lus10025620 [exp] 237 / 1e-75 AT5G08640 424 / 2e-149 flavonol synthase 1 (.1.2) Lus10004808 [exp] 216 / 2e-67 AT5G05600 457 / 5e-162 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10005037 [exp] 209 / 3e-64 AT3G11180 471 / 3e-166 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10004387 [exp] 201 / 4e-61 AT3G11180 509 / 0.0 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10037292 [exp] 191 / 4e-57 AT4G16330 416 / 5e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10022292 [exp] 187 / 3e-56 AT1G17020 449 / 5e-159 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.003G119100.1 pacid=42785888 polypeptide=Potri.003G119100.1.p locus=Potri.003G119100 ID=Potri.003G119100.1.v4.1 annot-version=v4.1 ATGATGGTGACTTCATCATTCGTAGTTCCAAGAGTTGAGAGTCTGGCAAGCAGTGGGATTCAATCAATCCCAAAAGAATATATTCGGCCCCAGGAGGAGC TAAGTAGCATTCGCGATGTTTTCGAAGAAGAGAAGAAAGTTGAAGGGCCTCAAGTTCCAACCATTGATTTGAAGGAAATGGAATCTGAGGACAAAGTGGT CCGTGAGAAATGCAGGGAAGAGCTAGTCAAGGCAGCTACAGAGTGGGGTGTTATGCACCTTGTTAACCATGGAATTCCTGATGATTTGATTGATCGTGTC AAGAAAGCTGGACAGGCTTTCTTTGATCTTCCTATTGAGGAAAAGGAGAAGCATGCTAATGATCAGGCTTCTGGAAATGTTCAAGGGTATGGAAGCAAGC TAGCTAACAATGCTAGTGGGCAGCTTGAGTGGGAGGACTATTTCTTCCATCTCATTTTTCCTGAGGACAAGCGTGACTTCTCCATTTGGCCTAAGACACC TAGTGATTATACTGAAGTCACTAGTGAATATGCAAGGCAGCTGAGAAGTTTAGCAACCAAAATTCTGTCAGTACTGTCACTTGGCCTGGGATTGGAAGAA GGAAGACTAGAAAAGGAGGTCGGTGGTCTGGAAGAGTTGCTACTCCAAATGAAGATCAACTACTACCCCAAGTGCCCTCAACCAGATCTAGCCTTAGGGG TTGAAGCTCACAGCGATGTAAGTGCACTCACTTTTATACTCCACAACATGGTGCCTGGTCTACAACTCTTATATGAAGGCAAGTGGATAACGGCAAAATG TGTCCCCAACTCAATCATCATGCACATTGGTGACACTGTTGAGATCTTGAGCAATGGAAAATACAAGAGTATTATTCACAGGGGACTTGTTAACAAGGAG AAGGTAAGGATTTCATGGGCAGTTTTTTGCGAGCCACCAAAGGCGAAAATCATCCTCAAGCCATTGGCAGAGATTGTGACTGAAGCTGAGCCACCATTGT TCCCTCCCCGCACCTTTTCTCAGCATATCGAGCATAAGCTTTTCAGGAAGACCCAAGATTCTCTCCTACCCAGAAAAGCTAATTAA
AA sequence Show only first row Show all	>Potri.003G119100.1 pacid=42785888 polypeptide=Potri.003G119100.1.p locus=Potri.003G119100 ID=Potri.003G119100.1.v4.1 annot-version=v4.1 MMVTSSFVVPRVESLASSGIQSIPKEYIRPQEELSSIRDVFEEEKKVEGPQVPTIDLKEMESEDKVVREKCREELVKAATEWGVMHLVNHGIPDDLIDRV KKAGQAFFDLPIEEKEKHANDQASGNVQGYGSKLANNASGQLEWEDYFFHLIFPEDKRDFSIWPKTPSDYTEVTSEYARQLRSLATKILSVLSLGLGLEE GRLEKEVGGLEELLLQMKINYYPKCPQPDLALGVEAHSDVSALTFILHNMVPGLQLLYEGKWITAKCVPNSIIMHIGDTVEILSNGKYKSIIHRGLVNKE KVRISWAVFCEPPKAKIILKPLAEIVTEAEPPLFPPRTFSQHIEHKLFRKTQDSLLPRKAN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Potri.003G119100 [exp]	0	1	Pt-ANS.2
AT1G08090		LIN1, ACH1, NRT...	LATERAL ROOT INITIATION 1, nit...		Potri.009G008500 [exp]	2.00	0.9516	PtNtr2-4,Pt-NRT2.7
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Potri.006G227400 [exp]	3.87	0.9533	Pt-CWINV.1
AT2G35770		SCPL28	serine carboxypeptidase-like 2...		Potri.008G041700 [exp]	4.89	0.9342
AT1G34580			Major facilitator superfamily ...		Potri.002G095900 [exp]	10.24	0.9140	HT1.1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125000 [exp]	14.83	0.9387
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Potri.012G069200 [exp]	16.73	0.9360
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Potri.018G075000 [exp]	18.33	0.9276
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.001G069000 [exp]	19.79	0.9248	7
AT1G58170			Disease resistance-responsive ...		Potri.005G100600 [exp]	21.44	0.9312
AT5G48810		B5#3, ATB5-B, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Potri.014G019200 [exp]	22.58	0.8882

Compare expression of checked genes

Potri.003G119100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.