Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22890 410 / 1e-144 PGR5-LIKEA, PGR5-LIKE A PGR5-LIKE A (.1.2.3.4.5) AT4G11960 379 / 4e-132 PGRL1B, PGR5-LIKE B PGR5-like B (.1.2) AT5G59400 52 / 2e-07 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G113000 [exp] 508 / 0 AT4G22890 392 / 4e-137 PGR5-LIKE A (.1.2.3.4.5) Potri.009G032300 [exp] 66 / 5e-12 AT5G59400 343 / 8e-119 unknown protein Potri.001G241400 [exp] 64 / 2e-11 AT5G59400 357 / 2e-124 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014135 [exp] 441 / 2e-156 AT4G22890 465 / 3e-166 PGR5-LIKE A (.1.2.3.4.5) Lus10006710 [exp] 433 / 1e-153 AT4G22890 468 / 2e-167 PGR5-LIKE A (.1.2.3.4.5) Lus10040799 [exp] 61 / 3e-10 AT5G59400 316 / 3e-108 unknown protein Lus10016531 [exp] 59 / 1e-09 AT5G59400 311 / 2e-106 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G119200.10 pacid=42787215 polypeptide=Potri.003G119200.10.p locus=Potri.003G119200 ID=Potri.003G119200.10.v4.1 annot-version=v4.1 ATGGCTAGCAAATTAGCCTTCAATTTGACATCTCCTCGAGTCTTCACTGCTCCTATTCAAAAACCAATCATCTCTTCATCTTCATCATTGCCATCCTTAT CATCTCCTTCTTGCTCTACCAGGGTTCAACTCAATGGAAAACAGTTTTCTCTTCGCGGAAGAATGCTTTTTCTTCCTACCAAGGCCACTGCTGACCAGCA AACTGATCAAGTCCAAGAAGATGACATGGATGATGGTAAGATCCTGCAATATTGTAGCATAGACAAGAAAGGCAAGAAGTCGTTGGGTGAAATGGAGCAA GATTTTCTGCAAGCGCTACAAGCATTTTATTATGAGGGGAAAGCTATAATGTCAAATGAAGAATTTGATAATCTCAAGGAGGAACTAATGTGGCAAGGAA GCAGCGTGGTTATGCTAAGTTCTGATGAACAGAAGTTTCTTGAAGCCTCTCTTGCTTATGTATCAGGGAATCCAATCATGAATGATGAAGAGTTTGATAA ACTGAAGATCAAATTAAAGACAGAAGGCAGCGAAATAGTTGTTGAAGGTCCAAGATGCAGTCTTCGTAGTAGAAAGGTTTATAGTGACCTGTCTGTTGAC TATTTGAAGATGTTCCTGCTGAACGTCCCGGCAACTGTTGTCGCACTAGGCTTGTTTTTCTTCTTGGATGATCTCACTGGTTTTGAAATCACTTATCTTT TGGAGCTCCCAGAGCCGTTCAGTTTCCTTTTCACCTGGTTTGCTGCAGTGCCCCTCATTGTTTGGTTAGCTCTGACACTAACAAATGCGATTGTGAAAGA CTTTTTGATCTTGAAGGGCCCCTGTCCCAACTGTGGCACGGAGAACGGCTCCTTCTTTGGAACCATATTGTCTATTTCAAGTGGTGGAGCCTCCAACACC CTTAAATGCTCAAATTGCTCAACTGAATTGGTGTACGATTCAAAAACACGCTTGATTACACTGCCAGAAGGAAGCGAAGCTTGA
AA sequence Show only first row Show all	>Potri.003G119200.10 pacid=42787215 polypeptide=Potri.003G119200.10.p locus=Potri.003G119200 ID=Potri.003G119200.10.v4.1 annot-version=v4.1 MASKLAFNLTSPRVFTAPIQKPIISSSSSLPSLSSPSCSTRVQLNGKQFSLRGRMLFLPTKATADQQTDQVQEDDMDDGKILQYCSIDKKGKKSLGEMEQ DFLQALQAFYYEGKAIMSNEEFDNLKEELMWQGSSVVMLSSDEQKFLEASLAYVSGNPIMNDEEFDKLKIKLKTEGSEIVVEGPRCSLRSRKVYSDLSVD YLKMFLLNVPATVVALGLFFFLDDLTGFEITYLLELPEPFSFLFTWFAAVPLIVWLALTLTNAIVKDFLILKGPCPNCGTENGSFFGTILSISSGGASNT LKCSNCSTELVYDSKTRLITLPEGSEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22890		PGR5-LIKEA, PGR...	PGR5-LIKE A (.1.2.3.4.5)		Potri.003G119200 [exp]	0	1
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Potri.017G062800 [exp]	1.73	0.9862	SK1
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Potri.013G026400 [exp]	2.00	0.9844
AT4G24700			unknown protein		Potri.015G084200 [exp]	3.46	0.9800
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.013G009400 [exp]	4.47	0.9677	VP2.2
AT4G21445			unknown protein		Potri.004G033400 [exp]	5.91	0.9763
AT2G36145			unknown protein		Potri.006G210000 [exp]	7.21	0.9776
AT3G01660			S-adenosyl-L-methionine-depend...		Potri.001G340900 [exp]	7.48	0.9750
AT1G32160			Protein of unknown function (D...		Potri.003G097400 [exp]	7.93	0.9666
AT5G44600			S-adenosyl-L-methionine-depend...		Potri.001G073000 [exp]	8.71	0.9679
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Potri.006G147300 [exp]	9.48	0.9695

Compare expression of checked genes

Potri.003G119200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.