Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45640 182 / 7e-60 ATSAP18, HDA19 SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 associated polypeptide P18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G151500 [exp] 194 / 2e-64 AT2G45640 185 / 3e-61 SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 associated polypeptide P18 (.1.2) Potri.014G074000 [exp] 171 / 1e-55 AT2G45640 163 / 1e-52 SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 associated polypeptide P18 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041388 [exp] 182 / 2e-59 AT2G45640 168 / 5e-54 SIN3 ASSOCIATED POLYPEPTIDE 18, SIN3 associated polypeptide P18 (.1.2) Lus10036540 [exp] 175 / 2e-51 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF06487 [poplar] [flax] SAP18 Sin3 associated polypeptide p18 (SAP18)
Representative CDS sequence Show only first row Show all	>Potri.003G119300.1 pacid=42786187 polypeptide=Potri.003G119300.1.p locus=Potri.003G119300 ID=Potri.003G119300.1.v4.1 annot-version=v4.1 ATGGAGAAGAAGAGCAGCAGAGACAGAGACGGCGAGATGGGTGGTGGCGCAGCCCATGCCAGACCCCTTCCTCCTCCCAGTCGGGCCCATCCTCCACCTC CTCCTCCTCGTCCCCGCATCGAACCTATCGATCGTGAAAAGACTTGTCCTTTATTACTTCGAGTTTTCACTAAGATTGGAAGTCATCATAAGCCAGAAGA TTTTGCTGTGAGAGGCAAGGAACCAAAAGATGAGGTTCAAATTTATACATGGAAAGATGCAACACTTCGCGAGTTAACTGATCTTGTCAAAGAGGTTGCT CCAGAGGCAAGGAGAAGAAATGCAAAGCTGTCATTTGCTTTTGTTTATCCTGATAAACATGGCCGTTTTGTGTTGAGAGTGGTGGGGATGACACATTCAA GTGGGAGACGACCAGATGATCTCAAGGCATTGGCCGAACTCAATTTCCAGATCGGAGATTACTTGGATGTCGCAATCATGTGA
AA sequence Show only first row Show all	>Potri.003G119300.1 pacid=42786187 polypeptide=Potri.003G119300.1.p locus=Potri.003G119300 ID=Potri.003G119300.1.v4.1 annot-version=v4.1 MEKKSSRDRDGEMGGGAAHARPLPPPSRAHPPPPPPRPRIEPIDREKTCPLLLRVFTKIGSHHKPEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEVA PEARRRNAKLSFAFVYPDKHGRFVLRVVGMTHSSGRRPDDLKALAELNFQIGDYLDVAIM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45640		ATSAP18, HDA19	SIN3 ASSOCIATED POLYPEPTIDE 18...		Potri.003G119300 [exp]	0	1
AT5G10780			unknown protein		Potri.006G266300 [exp]	3.16	0.7475
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Potri.005G157700 [exp]	3.74	0.7424	VF14.2
AT1G65700			Small nuclear ribonucleoprotei...		Potri.001G278000 [exp]	8.48	0.7164
AT1G07790		HTB1	Histone superfamily protein (....		Potri.008G029900 [exp]	8.66	0.6909
AT1G03330			Small nuclear ribonucleoprotei...		Potri.003G014900 [exp]	9.00	0.7286
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Potri.003G062800 [exp]	10.58	0.6742
AT3G55600			Membrane fusion protein Use1 (...		Potri.018G133700 [exp]	11.48	0.6306
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Potri.014G158300 [exp]	20.39	0.6264	SMT3.2
AT1G72880			Survival protein SurE-like pho...		Potri.003G041000 [exp]	23.66	0.6541
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Potri.001G334600 [exp]	27.38	0.6168

Compare expression of checked genes

Potri.003G119300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.