Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G22920 352 / 3e-123 ATNYE1, SGR1, STAY-GREEN1 non-yellowing 1 (.1) AT4G11910 333 / 6e-116 SGR2, STAY-GREEN2 unknown protein AT4G11911 319 / 3e-110 unknown protein AT1G44000 184 / 3e-57 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112600 [exp] 478 / 6e-173 AT4G22920 336 / 7e-117 non-yellowing 1 (.1) Potri.002G075700 [exp] 198 / 3e-63 AT1G44000 259 / 2e-87 unknown protein Potri.005G184700 [exp] 196 / 3e-62 AT1G44000 279 / 8e-95 unknown protein Potri.001G112500 [exp] 67 / 8e-14 AT4G22920 50 / 6e-08 non-yellowing 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001194 [exp] 374 / 1e-131 AT4G22920 350 / 7e-122 non-yellowing 1 (.1) Lus10024484 [exp] 372 / 9e-131 AT4G22920 340 / 4e-118 non-yellowing 1 (.1) Lus10042769 [exp] 180 / 6e-56 AT1G44000 247 / 2e-82 unknown protein Lus10029738 [exp] 179 / 3e-55 AT1G44000 269 / 1e-90 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12638 [poplar] [flax] Staygreen Staygreen protein
Representative CDS sequence Show only first row Show all	>Potri.003G119600.2 pacid=42785304 polypeptide=Potri.003G119600.2.p locus=Potri.003G119600 ID=Potri.003G119600.2.v4.1 annot-version=v4.1 ATGGGCTCTCTGGCAGTTGCTCCCTTTCTTCCTTTAAAGCTAAGACCCTCTATATTTGATCAAAACAGCTCTCTCTTTCCTTCAAAGAAAAAACTCAAGA GGAAGAACCAATCTATCAGTCCTGTGGCAAGGTTATTTGGGCCATCTATTTTTGAGGCATCAAAACTGAAGGTGTTGTTTTTAGGGGTTGATGAGAAGAA ACATCCAGGGAATCTGCCAAGGACTTATACACTAACACATAGTGATATTACAGCTAAACTTACTTTAGCCATCTCACAAACCATCAACAATTCTCAGTTG CAGGGATGGTCCAACAAATTGTACAGAGATGAAGTGGTGGCAGAGTGGAAGAAAGTAAAGGGAAAGATGTCTCTCCATGTTCACTGCCATATAAGTGGAG GCCATTTTCTCCTAGATTTATGTTGTAGACTTAGATATTTCATCTTCCGCAAAGAACTTCCTGTGGTATTGAAGGCCTTCTTTCATGGAGATGGGAATTT GTTTAGCAGCTATCCTGAATTGCAGGAGGCTTTAGTTTGGGTTTACTTTCATTCCAACATTCCAGAATTCAACAAGGTAGAGTGCTGGGGTCCACTCAAG GATGCCGCAGCACCTTGTACTGCTGAATCTGGCGGGCCCACTGAGAACAAGGAGCAAGCAAGCAACTGGAACTTGCCTGAGCCATGCCAAGAGAACTGTA AGTGTTGCTTTCCACCAATGAGCTTGATCCCATGGTCCGAAATGGTTCCCCAAGAGAACAAGAATAATCCAAGCACCCAGCAGAGCTTTCAACAAGCTCA ACAACCCTAA
AA sequence Show only first row Show all	>Potri.003G119600.2 pacid=42785304 polypeptide=Potri.003G119600.2.p locus=Potri.003G119600 ID=Potri.003G119600.2.v4.1 annot-version=v4.1 MGSLAVAPFLPLKLRPSIFDQNSSLFPSKKKLKRKNQSISPVARLFGPSIFEASKLKVLFLGVDEKKHPGNLPRTYTLTHSDITAKLTLAISQTINNSQL QGWSNKLYRDEVVAEWKKVKGKMSLHVHCHISGGHFLLDLCCRLRYFIFRKELPVVLKAFFHGDGNLFSSYPELQEALVWVYFHSNIPEFNKVECWGPLK DAAAPCTAESGGPTENKEQASNWNLPEPCQENCKCCFPPMSLIPWSEMVPQENKNNPSTQQSFQQAQQP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G22920		ATNYE1, SGR1, S...	non-yellowing 1 (.1)		Potri.003G119600 [exp]	0	1
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.013G148400 [exp]	1.41	0.9504
AT3G57810			Cysteine proteinases superfami...		Potri.008G026100 [exp]	1.73	0.9470
AT1G02305			Cysteine proteinases superfami...		Potri.002G184201 [exp]	1.73	0.9575
AT5G13800		CRN1, PPH	Co-regulated with NYE1, pheoph...		Potri.009G054800 [exp]	3.46	0.9469
AT1G77930			Chaperone DnaJ-domain superfam...		Potri.002G090600 [exp]	5.00	0.9447
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.005G181600 [exp]	5.09	0.9356
AT3G23790		AAE16	acyl activating enzyme 16, AMP...		Potri.001G321800 [exp]	5.29	0.9415
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Potri.008G007000 [exp]	5.47	0.9441
AT3G10420		SPD1	SEEDLING PLASTID DEVELOPMENT 1...		Potri.010G228600 [exp]	6.32	0.9396
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.005G250700 [exp]	7.41	0.9364

Compare expression of checked genes

Potri.003G119600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.