Plant FIBer expression Database

Potri.003G119800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G11860 575 / 0 Protein of unknown function (DUF544) (.1)
AT4G22960 126 / 2e-30 Protein of unknown function (DUF544) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G112300
[exp]
1071 / 0 AT4G11860 603 / 0.0 Protein of unknown function (DUF544) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006717
[exp]
656 / 0 AT4G11860 606 / 0.0 Protein of unknown function (DUF544) (.1)
Lus10014145
[exp]
483 / 6e-163 AT4G22960 167 / 4e-44 Protein of unknown function (DUF544) (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04424 MINDY_DUB MINDY deubiquitinase
Representative CDS sequence
>Potri.003G119800.5 pacid=42787331 polypeptide=Potri.003G119800.5.p locus=Potri.003G119800 ID=Potri.003G119800.5.v4.1 annot-version=v4.1
ATGGCTTCTACTTCTTCTCCAGGCGAAGAACCACAAAACCAGAATCAAGATCAGCAACAACAACAACAACAAGTAGTAGTAGCAGTGAAAGAGAGAGAGA
AAGAGTGCCTTCACAAAACCAAAACGATACACTTCTTAGGCCGTACCACTCCTATCGTTCTCCAAAACGACAATGGACCTTGTCCTCTCCTTGCCATCTG
TAACGTCCTTCTGTTAAAGAATGATCTAAATTTGAGCTCAGATAGCGCTGAAGTTTCGCAGGAGAAATTGCTATCCCTTGTTGCAGAAAGGTTGATTGAT
TCCAACAGTAATGTAAATAATAAAGATGCAGGATATGTCGAAAATCAACAGCAGAATATTGCAGATGCCATCGATTTGCTTCCAAGACTTGCAACTGGAA
TTGATGTAAATTTAAAGTTTAGGAGGATAGATGATTTTGAGTTTACCCGAGAATGTGCCATATTTGATTTACTTGACATTCCTTTATATCATGGTTGGAT
AGTTGATCCCCAGGACTATGATACTGCTAATGCCATTGGGCCAAAGTCCTATAATACTCTTATGGGGGAGCTTGTTGCTCTTGAAACAAGAAACATGGAG
GATGAAAGTAAAAATTTGACCGGGGAACATAGTAAAACTAAAACCGAGGAAGATTGCATTGACTTTGTTGCTGCAACAACTGCTACTTTGGGTGTTCCTT
CTCCTTGTCTTTCAAAGGCTAGATCTTTTGATGATTCTCCACATTCAGTCTCTGATCATCAAAAAGTAAGAAAAGGGGATTTAGAAGAAGAAGCAGAGCT
ATTGAGGGTCTTAAAATTGTCAGAGACTGAGTTGCCAATTTCAGTGGATGATTTTGTAGCCGATGTTGATGGAAGGGTTGTGTCTGTTGGCTCACATGAA
AGCACACCTATGAAGGGGACCATGGTTGTGGCTTCCTGGGATACATCAGAGGGGCATGTCGGTGTTGATATCAATCTTAGTGCATTGAGCACTGATGATA
ATAATAATCTGACATCTTCGGAAACTCCCCCAGGGAAACTGACAGGCTCTTCCTTAAAGACTGATCTGACCGATCATTTTGATAAATCAGTTTGTACAGA
ATCTGGAGAACATTTCTCTAGTAATGATGTGATTGAGAATAGTAGTGCTGACACAGTTGTTGAGATTCAAGGTGCATTGTCCCTTTCTTGTGCAAAAAGT
ACTGGATCTTTTGATGGAGACCCTACAGATATTTTGCATGATGGTCAGAAGGTTGAGAATCAGTCCACTTCTATTACCGAGGTTCACAAACCAGCAGATA
TTTCAAGTGGGCATGACATGTTGGATTTACCAGGGTTAGCTTCTCTAGTTCCAGAGTCAGATTCATCTAGTGGTAGAATGCAGAATTTTGATACACCTGA
TAACTTTAATTCAAGTGTTGATGGAAGTGAGCCCATATACGAGGGAGAAGAATGCATTTTCGATTCAAGAACTTCAAATTGTGAAGATAGAGAGCCTATG
TATGAAGGTGAGGTGATTCTTTCTGAACAAGCTGATAAAACTGTGAGGTCTAAGGATGAAATCACTGCACAGCAAGGGGAGCTGATAAGGAACTTTTTGA
AGAACAATGCTAGTCAGCTGACCTTTAATGGCCTCTTTTGCTTACAAGATGGGCTTAAAGAGCGTGAGCTGTGTGTTTTTTTCCGTAACAATCACTTTAG
CACGATGTTTAAGTATGATGGTGAACTGTATCTTTTAGCCACAGACCAAGGTTACATTAATCAGCCTGATTTGGTGTGGGAGAAACTCAATGAGGTAAAT
GGGGATACATTGTTTATGACAGGAAACTTTAAGGAATTCAAGGCGGAAAGTCATACAAATGACCCATGGGATGAGCACAATGCCATGACCAGTACTGCTG
ACTATCTTGCTAGCATTGGTAGTGCTGCACAAGCGGGTGTGGATATAAACTCTGATCTGCAACTGGCAATAGCTCTGCAGCAACAGGAGTATGAGCAGCA
GCAACAGCAACAGCCACAGCCGCAACACCATAATGTGCAGCAAGCATCCACCACTGGTGGTTCAAGACTAATCACAGGGCCCCAGGTGCCAAGGAGCAGT
GGTAAAACCGCATCTTCTTCTTCTTCTTCAAGGCTTGACACAAAACCAAAAGATAAGTGTAACGTCATGTGA
AA sequence
>Potri.003G119800.5 pacid=42787331 polypeptide=Potri.003G119800.5.p locus=Potri.003G119800 ID=Potri.003G119800.5.v4.1 annot-version=v4.1
MASTSSPGEEPQNQNQDQQQQQQQVVVAVKEREKECLHKTKTIHFLGRTTPIVLQNDNGPCPLLAICNVLLLKNDLNLSSDSAEVSQEKLLSLVAERLID
SNSNVNNKDAGYVENQQQNIADAIDLLPRLATGIDVNLKFRRIDDFEFTRECAIFDLLDIPLYHGWIVDPQDYDTANAIGPKSYNTLMGELVALETRNME
DESKNLTGEHSKTKTEEDCIDFVAATTATLGVPSPCLSKARSFDDSPHSVSDHQKVRKGDLEEEAELLRVLKLSETELPISVDDFVADVDGRVVSVGSHE
STPMKGTMVVASWDTSEGHVGVDINLSALSTDDNNNLTSSETPPGKLTGSSLKTDLTDHFDKSVCTESGEHFSSNDVIENSSADTVVEIQGALSLSCAKS
TGSFDGDPTDILHDGQKVENQSTSITEVHKPADISSGHDMLDLPGLASLVPESDSSSGRMQNFDTPDNFNSSVDGSEPIYEGEECIFDSRTSNCEDREPM
YEGEVILSEQADKTVRSKDEITAQQGELIRNFLKNNASQLTFNGLFCLQDGLKERELCVFFRNNHFSTMFKYDGELYLLATDQGYINQPDLVWEKLNEVN
GDTLFMTGNFKEFKAESHTNDPWDEHNAMTSTADYLASIGSAAQAGVDINSDLQLAIALQQQEYEQQQQQQPQPQHHNVQQASTTGGSRLITGPQVPRSS
GKTASSSSSSRLDTKPKDKCNVM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G11860 Protein of unknown function (D... Potri.003G119800
[exp]
0 1
AT5G10490 MSL2 MSCS-like 2 (.1.2.3) Potri.007G011100
[exp]
13.52 0.8463
AT1G13960 WRKY WRKY4 WRKY DNA-binding protein 4 (.1... Potri.017G088300
[exp]
17.43 0.8324
AT3G26000 Ribonuclease inhibitor (.1) Potri.001G337300
[exp]
17.66 0.8023
AT2G47820 unknown protein Potri.008G210200
[exp]
20.56 0.8281
AT2G30990 Protein of unknown function (D... Potri.014G142800
[exp]
23.57 0.8243
AT3G09670 Tudor/PWWP/MBT superfamily pro... Potri.006G131800
[exp]
27.65 0.8094
AT5G50350 unknown protein Potri.015G091500
[exp]
27.74 0.8029
AT5G25520 SPOC domain / Transcription el... Potri.006G246800
[exp]
28.98 0.8241
AT1G17020 ATSRG1, SRG1 senescence-related gene 1 (.1) Potri.001G381700
[exp]
33.88 0.8192 Pt-SRG1.3
AT3G13540 MYB ATMYB5, ATM2 myb domain protein 5 (.1) Potri.003G219900
[exp]
37.46 0.8103

Potri.003G119800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.