Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63000 532 / 0 UER1, NRS/ER "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) AT1G78570 504 / 9e-177 ATRHM1, RHM1, ROL1 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) AT3G14790 455 / 1e-157 ATRHM3, RHM3 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 3, rhamnose biosynthesis 3 (.1) AT1G53500 452 / 2e-156 ATRHM2, ATMUM4, RHM2, MUM4 ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 2, ARABIDOPSIS THALIANA MUCILAGE-MODIFIED 4, NAD-dependent epimerase/dehydratase family protein (.1) AT5G59290 47 / 6e-06 ATUXS3, UXS3 UDP-glucuronic acid decarboxylase 3 (.1.2) AT2G28760 45 / 4e-05 UXS6 UDP-XYL synthase 6 (.1.2.3) AT3G46440 45 / 5e-05 UXS5 UDP-XYL synthase 5 (.1.2) AT3G62830 43 / 0.0002 ATUXS2, UXS2, AUD1 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT2G47650 43 / 0.0002 UXS4 UDP-xylose synthase 4 (.1.2) AT3G53520 42 / 0.0003 ATUXS1, UXS1 UDP-glucuronic acid decarboxylase 1 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G112000 [exp] 605 / 0 AT1G63000 535 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Potri.011G103700 [exp] 504 / 1e-176 AT1G78570 1211 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.006G272700 [exp] 497 / 5e-174 AT1G78570 1078 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.001G383500 [exp] 497 / 5e-174 AT1G78570 1190 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Potri.008G053100 [exp] 47 / 1e-05 AT2G28760 623 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.001G237200 [exp] 45 / 2e-05 AT3G46440 637 / 0.0 UDP-XYL synthase 5 (.1.2) Potri.010G207200 [exp] 45 / 3e-05 AT2G28760 625 / 0.0 UDP-XYL synthase 6 (.1.2.3) Potri.014G129200 [exp] 43 / 0.0002 AT3G62830 720 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.002G204400 [exp] 43 / 0.0002 AT3G62830 723 / 0.0 UDP-GLUCURONIC ACID DECARBOXYLASE 2, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006719 [exp] 549 / 0 AT1G63000 531 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10014147 [exp] 548 / 0 AT1G63000 530 / 0.0 "UDP-4-KETO-6-DEOXY-D-GLUCOSE-3,5-EPIMERASE-4-REDUCTASE 1", nucleotide-rhamnose synthase/epimerase-reductase (.1) Lus10005560 [exp] 506 / 3e-178 AT1G78570 1123 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10013695 [exp] 504 / 1e-177 AT1G78570 1005 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10038146 [exp] 505 / 3e-177 AT1G78570 1228 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10042497 [exp] 504 / 1e-176 AT1G78570 1227 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10010942 [exp] 473 / 6e-165 AT1G78570 1130 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10007355 [exp] 320 / 2e-105 AT1G78570 982 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10020776 [exp] 311 / 5e-102 AT1G78570 964 / 0.0 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1) Lus10031389 [exp] 74 / 1e-16 AT1G78570 84 / 2e-20 REPRESSOR OF LRX1 1, ARABIDOPSIS THALIANA RHAMNOSE BIOSYNTHESIS 1, rhamnose biosynthesis 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF04321 [poplar] [flax] RmlD_sub_bind RmlD substrate binding domain
Representative CDS sequence Show only first row Show all	>Potri.003G120000.1 pacid=42786198 polypeptide=Potri.003G120000.1.p locus=Potri.003G120000 ID=Potri.003G120000.1.v4.1 annot-version=v4.1 ATGGGATTCGAAACTTCAAACGGCACCGCATCTACAAAACCACTTAAATTCCTCATCTACGGGCGCACTGGCTGGATCGGTGGACTCCTAGGCAAGCTTT GCCAATCCCAGGGCATCGACTTCACCTACGGTTCCGGTCGCCTTGAAAACCGACCCTCCCTCGAAGCCGACGTTGCTGCTGTCAATCCCACTCATGTTTT CAACGCTGCCGGCGTCACTGGCAGGCCTAACGTCGACTGGTGCGAGTCCCATAAGGTCGAGACCATAAGAACCAATGTGGTCGGCACGCTGACGTTGGCT GATGTGTGCAGGGAGAAAGGTTTGGTCTTGATCAATTATGCTACTGGTTGTATCTTTGAGTATGACTCGAGTCATCCTCTCGGGTCGGGTATTGGTTTTA AGGAAGAGGATACTCCGAACTTTATCGGATCGTTTTATTCCAAGACTAAGGCCATGGTAGAAGATTTGCTCAGGAATTATGAAAATGTTTGTACATTGCG CGTCAGAATGCCCATTTCATGTGATCTGGCCAACCCTCGCAACTTCATCACGAAGATCACTCGATATGAGAAGGTAGTAAACATTCCAAACTCCATGACG ATCTTGGATGAACTCCTTCCCATTTCCATTGAGATGGCAAAGAGAAACCTTACTGGAATCTATAACTTTACGAATCCTGGAGTGGTCAGTCACAATGAGA TTTTGGAAATGTATCGGGATTACATTGACCCCAAATTCACATGGAAAAACTTCACTCTTGAGGAGCAAGCTAAGGTAATTGTTGCCCCAAGGAGCAACAA TGAGCTTGATACTGTCAAATTGAAGCAGGAATTCCCTGAGCTCTTGCCAATAAAGGAGTCCCTCATCAAGTATGTCTTCAAACCAAATCAGAAGACTACT GCTGCTTGA
AA sequence Show only first row Show all	>Potri.003G120000.1 pacid=42786198 polypeptide=Potri.003G120000.1.p locus=Potri.003G120000 ID=Potri.003G120000.1.v4.1 annot-version=v4.1 MGFETSNGTASTKPLKFLIYGRTGWIGGLLGKLCQSQGIDFTYGSGRLENRPSLEADVAAVNPTHVFNAAGVTGRPNVDWCESHKVETIRTNVVGTLTLA DVCREKGLVLINYATGCIFEYDSSHPLGSGIGFKEEDTPNFIGSFYSKTKAMVEDLLRNYENVCTLRVRMPISCDLANPRNFITKITRYEKVVNIPNSMT ILDELLPISIEMAKRNLTGIYNFTNPGVVSHNEILEMYRDYIDPKFTWKNFTLEEQAKVIVAPRSNNELDTVKLKQEFPELLPIKESLIKYVFKPNQKTT AA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63000		UER1, NRS/ER	"UDP-4-KETO-6-DEOXY-D-GLUCOSE-...		Potri.003G120000 [exp]	0	1
AT1G20010		TUB5	tubulin beta-5 chain (.1)		Potri.002G021800 [exp]	3.46	0.9210
AT3G49720			unknown protein		Potri.009G082400 [exp]	3.60	0.9262
AT5G37310			Endomembrane protein 70 protei...		Potri.017G144241 [exp]	7.21	0.9249
AT4G31300		PBA1	N-terminal nucleophile aminohy...		Potri.006G077900 [exp]	7.74	0.9199	PBA1.2
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G034200 [exp]	8.77	0.9192
AT3G27320			alpha/beta-Hydrolases superfam...		Potri.008G180600 [exp]	8.77	0.9079
AT1G04430			S-adenosyl-L-methionine-depend...		Potri.002G036800 [exp]	9.79	0.9068
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.006G063000 [exp]	9.89	0.9059	AVP.5
AT5G03300		ADK2	adenosine kinase 2 (.1)		Potri.010G224300 [exp]	11.35	0.9221	ADK2.2
AT3G13410			unknown protein		Potri.001G000900 [exp]	11.66	0.9176

Compare expression of checked genes

Potri.003G120000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.