Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G59190 536 / 0 subtilase family protein (.1) AT3G46850 514 / 4e-174 Subtilase family protein (.1) AT5G59100 513 / 2e-173 Subtilisin-like serine endopeptidase family protein (.1) AT5G59090 509 / 2e-172 ATSBT4.12 subtilase 4.12 (.1.2.3) AT3G46840 502 / 2e-169 Subtilase family protein (.1) AT5G03620 501 / 8e-169 Subtilisin-like serine endopeptidase family protein (.1) AT5G58830 495 / 4e-167 Subtilisin-like serine endopeptidase family protein (.1) AT5G59120 489 / 3e-164 ATSBT4.13 subtilase 4.13 (.1) AT5G58840 484 / 1e-162 Subtilase family protein (.1) AT5G58820 473 / 9e-159 Subtilisin-like serine endopeptidase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G133200 [exp] 719 / 0 AT5G59090 646 / 0.0 subtilase 4.12 (.1.2.3) Potri.010G196700 [exp] 655 / 0 AT5G59100 579 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196800 [exp] 650 / 0 AT5G59100 599 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.010G196900 [exp] 612 / 0 AT5G59100 657 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G037900 [exp] 543 / 0 AT5G59100 777 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.009G038001 [exp] 533 / 0 AT3G46850 794 / 0.0 Subtilase family protein (.1) Potri.002G151900 [exp] 530 / 4e-180 AT4G00230 938 / 0.0 xylem serine peptidase 1 (.1) Potri.006G114500 [exp] 502 / 2e-169 AT5G03620 874 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Potri.014G074500 [exp] 471 / 2e-159 AT4G00230 790 / 0.0 xylem serine peptidase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002964 [exp] 704 / 0 AT5G59100 624 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10042555 [exp] 663 / 0 AT5G59100 603 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10009867 [exp] 604 / 0 AT5G59190 629 / 0.0 subtilase family protein (.1) Lus10004685 [exp] 602 / 0 AT4G00230 647 / 0.0 xylem serine peptidase 1 (.1) Lus10040253 [exp] 600 / 0 AT5G59090 640 / 0.0 subtilase 4.12 (.1.2.3) Lus10004682 [exp] 576 / 0 AT5G59190 555 / 0.0 subtilase family protein (.1) Lus10004683 [exp] 574 / 0 AT5G59190 600 / 0.0 subtilase family protein (.1) Lus10009868 [exp] 573 / 0 AT5G03620 605 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10004686 [exp] 550 / 0 AT5G59100 611 / 0.0 Subtilisin-like serine endopeptidase family protein (.1) Lus10000396 [exp] 522 / 4e-178 AT5G59190 477 / 4e-160 subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Potri.003G120101.2 pacid=42785317 polypeptide=Potri.003G120101.2.p locus=Potri.003G120101 ID=Potri.003G120101.2.v4.1 annot-version=v4.1 ATGGGTTTCTCTAAAGGCAAACTTGGAGCACCCTTGGAAGGAAATGTTGTTATCGGTTTTCTGGACACAGGAATCTGGCCAGAATCTGATAGCTTCAATG ATGAAGGAATGAGCGCTCCACCTGCTAAATGGAAAGGAAAATGCATTGGTGCCAACTTCACCTGCAACAACAAACTCATTGGAGCCCGGTGGTACAACAG CGAGAACTTCTTTGACATTACTGACTTCCCATCCCCTAGAGACTCCGAGGGACATGGAACCCATACTTCTTCAACAGCAGCTGGCCGTGAGGTGCAAGGA GCAAGCTACTTCGGTCTAGCTGAAGGAGCTGCAAGAGGTGGAGTTCCCAATGCAAGAATTGCTATGTACAAAGTTTGCTGGTCGTATGGATGCTCAAGTG CAGATATCCTCGCAGCATATGATGATGCCATAGCAGATGGTGTTGATATTATATCTGTGTCCCTTGGTTCCGACTTTCCATTCCCATATATGGAAGATCC CATCGCCATTGGATCTTTCCATGCCATGAAAAACGGTATACTGACCTCAAATTCTGCTGGAAATTCTGGACCCTATCCATATTCAGTCTCCAACTGCGCA CCATGGACATTGACGGTAGCTGCCAGCACCATTGACAGGAAGTTTGTTGCACAAGTTGTCCTAGGCAACGGACTAGCCTTAAGTGGACTCTCGATAAATA ATTTTGATCTCAACGGGACCACATATCCATTGATTTGGGGAGGAGATGCAGTTAACTTCTCAGCAGGTGTTAACACGGAAATTGCAGGCTATTGCTTTCC TGGAGCTCTCAATTCATATAAAGTGGAGCGGAAGATTGTTCTCTGTGATACGATGGTGACTGGTTCTGACATTCTGATCGCTAATGGTGTGGGTGTCATA ATGTCAGATTCATTTTACAGTGTAGATTTTGCTTTCAGTTTCCCGGTACCAGCAACAGTAATCAGCAATGAAGATAGAGTCAAAGTCTTGAATTACATCA GAACAACAGAGAATCCGACCGCAACTATTCTGGTTGCTCAGGGTTGGAAGGATGTTGTGGCTGCTTCAGTTGTATCGTTTTCTTCGAGAGGACCAAACCC GATCACCCCAGATATTCTCAAGCCTGATATCACTGCCCCTGGTGTGGACATCCTCGCTGCCTGGTCACCTGTGGCACCTCCTTCTATCGACTACAAGGAC ACCAGGAGCGTGAATTTCAACATTATCTCCGGTACGTCCATGTCTTGTCCACACACTAGTGCTGCTGCTGCCTATGTGAAGGCTGGCCACCCTAACTGGT CTCCTGCTGCCATTAAATCAGCCCTCATGACAACAGCTACTATAATGGACCCGAGGAAGCACGTTGACCTTGAGTTTTCTTACGGATCTGGTCAGATCAA TCCAGAGCATGCATTAAACCCTGGGCTTGTTTACAATGCATCCGAAGCAGATTATATTAACTTCCTCTGCAAGCAAGGTTACAACACTACCACTCTCAGA ATGATCACTGGTTCCAACAGCAGTGTTTGCAACAGCACCACACCTGGAAGAGCCTGGGATCTTAACTACCCAACTTTTGCCCTAGCCGTGGAAGATGGCC AGCCAATTCAGGGAGTCTTTACTAGGACAGTTACCAATGTTGGTAATAGCTATTCAACCTACACTGTCAGCACGTACATGCCATACTCTGTTAGCATCAC TGTGGAGCCCTCTGTTCTGACATTCTCTAAAATCGGAGAGATGAAAACGTTCACAGTGAAGCTCTATGGACCGGTGATTGCGCAGCAGCCAATCATGTCA GGTGCAATCACCTGGAAAGATGGGAACGGTCATGAGGTGAGAAGCCCCGTGGTTGTATACAATATCCTCCCTGGTTACGAGTATGGGATACCCACTTCCT CCATGACAACACAGAAAACAGACAAATTTGAAGGCCCTTCCATGTATCACAAGACCGGTATCCTCGGACGCCACTAA
AA sequence Show only first row Show all	>Potri.003G120101.2 pacid=42785317 polypeptide=Potri.003G120101.2.p locus=Potri.003G120101 ID=Potri.003G120101.2.v4.1 annot-version=v4.1 MGFSKGKLGAPLEGNVVIGFLDTGIWPESDSFNDEGMSAPPAKWKGKCIGANFTCNNKLIGARWYNSENFFDITDFPSPRDSEGHGTHTSSTAAGREVQG ASYFGLAEGAARGGVPNARIAMYKVCWSYGCSSADILAAYDDAIADGVDIISVSLGSDFPFPYMEDPIAIGSFHAMKNGILTSNSAGNSGPYPYSVSNCA PWTLTVAASTIDRKFVAQVVLGNGLALSGLSINNFDLNGTTYPLIWGGDAVNFSAGVNTEIAGYCFPGALNSYKVERKIVLCDTMVTGSDILIANGVGVI MSDSFYSVDFAFSFPVPATVISNEDRVKVLNYIRTTENPTATILVAQGWKDVVAASVVSFSSRGPNPITPDILKPDITAPGVDILAAWSPVAPPSIDYKD TRSVNFNIISGTSMSCPHTSAAAAYVKAGHPNWSPAAIKSALMTTATIMDPRKHVDLEFSYGSGQINPEHALNPGLVYNASEADYINFLCKQGYNTTTLR MITGSNSSVCNSTTPGRAWDLNYPTFALAVEDGQPIQGVFTRTVTNVGNSYSTYTVSTYMPYSVSITVEPSVLTFSKIGEMKTFTVKLYGPVIAQQPIMS GAITWKDGNGHEVRSPVVVYNILPGYEYGIPTSSMTTQKTDKFEGPSMYHKTGILGRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G59190			subtilase family protein (.1)		Potri.003G120101 [exp]	0	1
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213223 [exp]	8.94	0.9838
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G000400 [exp]	12.08	0.9837	MALD1.1
					Potri.005G034000 [exp]	14.93	0.9183
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Potri.004G180400 [exp]	15.68	0.9835
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.008G032100 [exp]	19.49	0.9830
AT5G39160			RmlC-like cupins superfamily p...		Potri.011G163216 [exp]	19.59	0.9822
					Potri.014G082000 [exp]	20.00	0.9833
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G147800 [exp]	20.39	0.9816
AT4G18950			Integrin-linked protein kinase...		Potri.017G123100 [exp]	21.63	0.9828
AT5G62670		AHA11	H\(+\)-ATPase 11, H\(+\)-ATPas...		Potri.003G080500 [exp]	22.71	0.9579	Pt-HA1.3

Compare expression of checked genes

Potri.003G120101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.