Plant FIBer expression Database

Potri.003G120300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G11820 796 / 0 FKP1, EMB2778, MVA1, BAP1, HMGS FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G111700
[exp]
905 / 0 AT4G11820 795 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
Potri.003G120400
[exp]
515 / 0 AT4G11820 470 / 3e-167 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006348
[exp]
814 / 0 AT4G11820 768 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
Lus10002961
[exp]
751 / 0 AT4G11820 732 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0046 Thiolase PF01154 HMG_CoA_synt_N Hydroxymethylglutaryl-coenzyme A synthase N terminal
CL0046 Thiolase PF08540 HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal
Representative CDS sequence
>Potri.003G120300.1 pacid=42785641 polypeptide=Potri.003G120300.1.p locus=Potri.003G120300 ID=Potri.003G120300.1.v4.1 annot-version=v4.1
ATGGCAAAGAATGTGGGAATCCTCGCTGTGGATATTTACTTCCCTCCTACCTGTGTTCAACAGGAAGCCCTGGAGGCCCACGATGGTGCAAGCAAAGGGA
AATACACAATTGGACTTGGACAAGATTGCATGGGATTTTGTACAGAAGTGGAAGATGTTATCTCAATGAGTTTGACAGTTGTGAGTTCACTTCTTGAGAA
GTACAATGTTGATCCAAAACAAATTGGTCGCTTAGAAGTTGGCAGTGAGACCGTTATTGACAAGAGCAAATCCATTAAGACCTTCTTGATGCAAATCTTC
GAGAAATGTGGAAACACTGACATTGAAGGCGTTGACTCAACTAATGCATGCTATGGAGGAACTGCAGCTTTATTCAACTGTGTCAATTGGGTTGAGAGTT
GCTCATGGGATGGACGATATGGGCTTGTTGTGTGTACTGACAGTGCGGTCTATGCAGAAGGGCCTGCTCGACCAACTGGAGGAGCTGCTGCCATTGCCAT
GCTAGTCGGTCCGGATGCACCTATTACTTTTGAAAGCAAATTTAGGGGGAGTCACATGTCTCATGTCTATGATTTCTATAAGCCCAACCTTGCCAGTGAA
TATCCGGTTGTGGATGGCAAGCTTTCCCAAACATGCTACCTCATGGCCCTTGATTCCTGCTACAAACAATTTTGTGCCAAGTACGAGAAATCAACAGGCA
AACAATTCTCTATTTCTGATGCTGCCTATTTTGTATTCCATTCTCCATATAACAAGCTTGTACAGAAAAGTTTTGCTCGTTTGGTGTTCGATGACTCTGT
GAGAAATGCCAGCTCTATTGATGAGGCTGCTAAAGAGAAACTAGCACCATTTTCAACTTTATCTGGTGATGAAAGCTACCAAAACCGGGATCTTGAGAAG
GTATCCCAGCAAGTTGCAAAGCCTCTTTATGACGCAAAGGTGCAACCAACCACTTTGATACCCAAGCAAGTTGGCAACATGTATACTGCATCTCTCTATG
CGGCATTTATATCCCTTCTTCACAATAAAAGTAGTGAATTGGCGGGCAAGAGGGTTATATTGTTCTCATATGGAAGTGGTTCGACAGCCACAATGTTCTC
ATTGAAATTACATGAAGGTCAAAAGCCATTTAGCTTGTCAAACATTGCAACCGTGATGAATGTCTCAACGAAGTTGAAGTCAAGGCATGAGTTTTCTGCA
GTGAAATTTGTCGAAACTATAAATCTAATGGAGCACAGGTACGGAGGCAAGGACTTTGTGACGAGCAAGGATTGTAGCCTCTTGGCTCCAGGAACGTACT
ATCTGACGGAAGTCGACTCTATGTACCGAAGATTTTATGCCAAGAAGCCTGTGGATGGTGCTTGCGAGAATGGTTCACTTGTCAATGGTCACTAA
AA sequence
>Potri.003G120300.1 pacid=42785641 polypeptide=Potri.003G120300.1.p locus=Potri.003G120300 ID=Potri.003G120300.1.v4.1 annot-version=v4.1
MAKNVGILAVDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCMGFCTEVEDVISMSLTVVSSLLEKYNVDPKQIGRLEVGSETVIDKSKSIKTFLMQIF
EKCGNTDIEGVDSTNACYGGTAALFNCVNWVESCSWDGRYGLVVCTDSAVYAEGPARPTGGAAAIAMLVGPDAPITFESKFRGSHMSHVYDFYKPNLASE
YPVVDGKLSQTCYLMALDSCYKQFCAKYEKSTGKQFSISDAAYFVFHSPYNKLVQKSFARLVFDDSVRNASSIDEAAKEKLAPFSTLSGDESYQNRDLEK
VSQQVAKPLYDAKVQPTTLIPKQVGNMYTASLYAAFISLLHNKSSELAGKRVILFSYGSGSTATMFSLKLHEGQKPFSLSNIATVMNVSTKLKSRHEFSA
VKFVETINLMEHRYGGKDFVTSKDCSLLAPGTYYLTEVDSMYRRFYAKKPVDGACENGSLVNGH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G11820 FKP1, EMB2778, ... FLAKY POLLEN 1, hydroxymethylg... Potri.003G120300
[exp]
0 1
AT3G10260 Reticulon family protein (.1.2... Potri.002G055600
[exp]
3.31 0.8240
AT5G53560 B5#2, ATB5-A, A... ARABIDOPSIS CYTOCHROME B5 ISOF... Potri.012G024600
[exp]
6.63 0.7535
AT2G44350 CSY4, ATCS CITRATE SYNTHASE 4, Citrate sy... Potri.001G230500
[exp]
8.06 0.7524 ATCS.2
AT5G07990 CYP75B1, D501, ... TRANSPARENT TESTA 7, CYTOCHROM... Potri.001G167900
[exp]
8.60 0.7658
AT5G27450 MVK, MK mevalonate kinase (.1.2.3) Potri.013G024000
[exp]
12.84 0.6895
AT1G44835 YbaK/aminoacyl-tRNA synthetase... Potri.005G175900
[exp]
21.56 0.7117
AT1G60810 ACLA-2 ATP-citrate lyase A-2 (.1) Potri.008G188900
[exp]
21.90 0.6850 Pt-ACLA.1
AT1G76390 PUB43 plant U-box 43, ARM repeat sup... Potri.012G019900
[exp]
26.38 0.7652
AT1G78570 ATRHM1, RHM1, R... REPRESSOR OF LRX1 1, ARABIDOPS... Potri.006G272700
[exp]
26.38 0.7154
AT3G62760 ATGSTF13 Glutathione S-transferase fami... Potri.002G207672
[exp]
27.36 0.7440

Potri.003G120300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.