Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11820 470 / 2e-167 FKP1, EMB2778, MVA1, BAP1, HMGS FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G120300 [exp] 516 / 0 AT4G11820 796 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2) Potri.001G111700 [exp] 504 / 0 AT4G11820 795 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002961 [exp] 479 / 2e-171 AT4G11820 732 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2) Lus10006348 [exp] 457 / 4e-162 AT4G11820 768 / 0.0 FLAKY POLLEN 1, hydroxymethylglutaryl-CoA synthase / HMG-CoA synthase / 3-hydroxy-3-methylglutaryl coenzyme A synthase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0046 [poplar] [flax] Thiolase PF01154 [poplar] [flax] HMG_CoA_synt_N Hydroxymethylglutaryl-coenzyme A synthase N terminal CL0046 [poplar] [flax] Thiolase PF08540 [poplar] [flax] HMG_CoA_synt_C Hydroxymethylglutaryl-coenzyme A synthase C terminal
Representative CDS sequence Show only first row Show all	>Potri.003G120400.1 pacid=42784673 polypeptide=Potri.003G120400.1.p locus=Potri.003G120400 ID=Potri.003G120400.1.v4.1 annot-version=v4.1 ATGGCAAAGAATGTGGGAATCCTCGCTATGCATATTTACTTCCCTCCTACCTGTGTTCAACAGGAAGCCCTGGAGGCCCACGATGGTGCAAGCAAAGGGA AATACACAATTGGACATGGACAAGATTGCATGGGATTTTGTACAGAAGTGGAAGATGTTATCTCAATGAGTTTGACAGCTGTGAGTTCACTTCTTGAGAA GTACAATGTTGATCCAAAACAAATTGGTCGCTTAGAAGTTGGCAGTGAGACCGTTATTGACAGGAGCAAATCCATTAAGACCTTCTTGATGCAAATCTTC GAGAAATGTGGAAACACTGACATTGAAGGCGTTGACTCAACTAATGCATGCTATGGAGGAACAGCAGCTTTATTCAACTGTGTCAATTGGGTTGAGAGTT GCTCATGGGATGGACGCTATGGGCTTGTTGTGTGTACTGACAGTTCGGTCTATGCAGAAGGGCCCGCTCGACCAACTGGAGGAGCTGCTGCCATTGCCAT GCTAATCGGTCCAGATGCACCTATTACTTTTGAAAGCAAATTTAGGGGGAGTCACATGTCTCATGCCTACGATTTCTATAAGCCCAACCTTGCCAGTGAA TATCCGGTTGTGGATGGCAAGCTTTCCCAAACATGCTACCTCATGGCCCTTGATTCCTGCTACAAAAAATTTTGTGCCAAGTACGAGAAATCAACAGGCA AACAATTCTTTATTTCTGATGCTGCCTATTTTGTATTCCATTCTCCATATAACAAGGTAAATTGA
AA sequence Show only first row Show all	>Potri.003G120400.1 pacid=42784673 polypeptide=Potri.003G120400.1.p locus=Potri.003G120400 ID=Potri.003G120400.1.v4.1 annot-version=v4.1 MAKNVGILAMHIYFPPTCVQQEALEAHDGASKGKYTIGHGQDCMGFCTEVEDVISMSLTAVSSLLEKYNVDPKQIGRLEVGSETVIDRSKSIKTFLMQIF EKCGNTDIEGVDSTNACYGGTAALFNCVNWVESCSWDGRYGLVVCTDSSVYAEGPARPTGGAAAIAMLIGPDAPITFESKFRGSHMSHAYDFYKPNLASE YPVVDGKLSQTCYLMALDSCYKKFCAKYEKSTGKQFFISDAAYFVFHSPYNKVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11820		FKP1, EMB2778, ...	FLAKY POLLEN 1, hydroxymethylg...		Potri.003G120400 [exp]	0	1
					Potri.005G038600 [exp]	11.74	0.8036
AT5G52840			NADH-ubiquinone oxidoreductase...		Potri.017G149100 [exp]	15.03	0.8091
AT4G19010			AMP-dependent synthetase and l...		Potri.003G099700 [exp]	16.94	0.7480	Ptr4CL13
AT3G26050			TPX2 (targeting protein for Xk...		Potri.008G180900 [exp]	17.20	0.7995
AT3G58610			ketol-acid reductoisomerase (....		Potri.014G055100 [exp]	18.43	0.7844
AT1G06900			Insulinase (Peptidase family M...		Potri.013G154600 [exp]	21.09	0.7197
AT5G37930			Protein with RING/U-box and TR...		Potri.017G122800 [exp]	29.66	0.7934
AT3G03250		AtUGP1, UGP1, U...	UDP-GLUCOSE PYROPHOSPHORYLASE ...		Potri.013G070001 [exp]	31.17	0.7220
					Potri.003G179301 [exp]	40.31	0.7808
AT3G20630		PER1, ATUBP14, ...	TITAN6, phosphate deficiency r...		Potri.011G125800 [exp]	45.89	0.7376	Pt-UBP14.1

Compare expression of checked genes

Potri.003G120400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.