Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51920 487 / 3e-166 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G22980 406 / 8e-135 unknown protein AT5G66950 263 / 3e-77 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT4G37100 254 / 1e-73 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT2G23520 253 / 3e-73 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) AT1G16540 68 / 2e-11 ACI2, ABA3, SIR3, LOS5, ATABA3 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111600 [exp] 1032 / 0 AT4G22980 431 / 2e-144 unknown protein Potri.015G137900 [exp] 662 / 0 AT5G51920 464 / 3e-157 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.005G131300 [exp] 270 / 4e-79 AT2G23520 1227 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G036100 [exp] 269 / 5e-79 AT2G23520 1236 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.003G172100 [exp] 87 / 4e-18 AT5G51920 91 / 1e-19 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.015G097000 [exp] 81 / 3e-16 AT4G37100 97 / 9e-22 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.012G098200 [exp] 78 / 3e-15 AT4G37100 95 / 4e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Potri.007G066400 [exp] 60 / 5e-09 AT1G16540 1071 / 0.0 SIRTINOL RESISTANT 3, LOW OSMOTIC STRESS 5, ALTERED CHLOROPLAST IMPORT 2, ABA DEFICIENT 3, molybdenum cofactor sulfurase (LOS5) (ABA3) (.1) Potri.001G056400 [exp] 45 / 2e-05 AT5G51920 59 / 1e-10 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038892 [exp] 570 / 0 AT5G51920 578 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10015013 [exp] 564 / 0 AT5G51920 570 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10006342 [exp] 331 / 2e-104 AT5G51920 432 / 4e-144 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10002958 [exp] 275 / 4e-83 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10019650 [exp] 270 / 2e-79 AT4G37100 1186 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10000751 [exp] 269 / 3e-79 AT4G37100 1141 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022472 [exp] 268 / 2e-78 AT2G23520 1238 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10016776 [exp] 267 / 4e-78 AT2G23520 1229 / 0.0 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10037025 [exp] 79 / 1e-15 AT5G51920 86 / 3e-18 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1) Lus10022447 [exp] 78 / 2e-15 AT2G23520 96 / 1e-21 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.003G120500.2 pacid=42786154 polypeptide=Potri.003G120500.2.p locus=Potri.003G120500 ID=Potri.003G120500.2.v4.1 annot-version=v4.1 ATGCGTTCACCTTGCACTAGAGAGGCCTCACAAGCCTGCTTTCATAATTTCTGTCAATTGCCTTCTGAGCCCCAGAGTCCAACATCCATAACCACTGTTT CTGCATCCCGCCATGTTCTTGAAGTTGCCATGGGATCATTGATATATCCAAACTCTCAATTCACCAATCACGAGTCCCTCCCTTCATTGCAAGAGTCATT CTCCAATTTCACAAAAGCATTTCCACAGTATTCTCAGACTGATCAGGCTGACAAAATCCGAGAACAAGAATACTACCATCTCTCCCTGTCCAACCATGTT TGTTTCGATTATATTGGCCACGGCCTCTTCTCATACTCTCAGCAACGAAGTCACTCTTGGGAAGCTCCATTTGCCTCAACATCATCTGCTTCTCCTCCAT CACGCCAATATTCCTCAGGTTTAGAACCGCCCTTCTTTGATATTTCCTACAAGGCAGCTAACTTACATTCGCAAATACAACATGGTGGCCAAATGTCAGA ATTGGAATACGAGATGCAGAAAAGAATTATGGCATTGATGAATCTCTCCGAAGATGATTACACGATGGTTTTCACTGCCAACCAGTTATCCGCATTCAAA CTTGTGGCAGACTCTTATCCATTTCAGTCAAATCAAAATCTTCTTACGGTATATGACTATGAGAATGAGGCAGTGAAAGTAATGATTGAAAGCTCCAAGA ACAAAGGGGCACGGGTCATGTCAGCTGAATTCTCATGGCCTAGTTTAAGATTAAAGTCAGGAAAATTGCTAAAGAAGGTAAGGCGTAAGAGGAAGAACAA GAGGGGACTATTTGTTTTCCCACTTCAATCAAGGATGACAGGAGCTAGGTATTCATACCTCTGGATGACCATGGCTCAGGAAAATGGATGGCATGTCTTA CTTGATGCTTGTGGCTTAGGACCAAAAGATATGGAGACCCTGGGCCTGTCCCTCTTTAAGCCAGATTTCCTGGTCTGCTCTTTTTTCAAGGTTTTTGGTG AAAACCCATCTGGTTTTTGCTGTCTATTTGTGAAGAAATCCAGTTCTTCAATTTTAAAGGATTCAACTGGTACATGTATAGTGAGGCTTGTCCCAGCTAG GAGACCTTCTCAAATTTCAGAAGAGTTGGCTAATGACGACGTAGAAACTGAAGAAAGAACTAAACAAGAGATACATGTTGATGACAATTTGCAGGGCTCC TCCTCAGGTCCTATTTTCAGGCAGCAGACAAGTGAGGTAACTTCTGACCCGCAAGAAACCAAAGAGATTTCAGTAAAACATGAAGCACCAGAAATTGAGG AATCAGTGGCATCATTTGAATCCTCCAAATCCCAAATCATTGCTGGGTATGGAAGTGGGCATTCACATCTTGAATGTAGAGGCTTGGATCATGCAGACTC GTTGGGCCTGATACTAATCAGTACCAGAGCAAGGTACCTCATCAACTGGTTGGTAAATGCATTAATGAGTCTTCAACATCCACATTCAGAAAATAGGAAT CCCCTAGTCAGAATCTACGGACCGAAGGTTAAATTTGATCGAGGACCAGCAGTGGCATTCAACGTATTTGATTGGAAAGGAGAAAAGATAGACCCTTCAA TTGTACAGAAGCTTGCTGATCGAAACAATATTTCTTTAAGCAAAGGATTTTTGTTCCACATTTGGTTCCCAGATGAGTATGAACATGAGAGGGAACAGAT AATAGAGACAAGGACAAGTAAAGGAGGAAAAGTCTTAAATGGGACGAGAGAGAAACTTCATTCAGGAATTTCTGTTGTCACAGCTTCCCTCGGGTTCTTG ACAAACTTTGAGGACATTTACAGGCTCTGGGCATTTGTTTCACGGTTCTTGGATGCAGACTTTGTGGAGAAAGAGAGATGGAGATACACAGCTCTAAATC AGATGACGATAGAAGTTTAG
AA sequence Show only first row Show all	>Potri.003G120500.2 pacid=42786154 polypeptide=Potri.003G120500.2.p locus=Potri.003G120500 ID=Potri.003G120500.2.v4.1 annot-version=v4.1 MRSPCTREASQACFHNFCQLPSEPQSPTSITTVSASRHVLEVAMGSLIYPNSQFTNHESLPSLQESFSNFTKAFPQYSQTDQADKIREQEYYHLSLSNHV CFDYIGHGLFSYSQQRSHSWEAPFASTSSASPPSRQYSSGLEPPFFDISYKAANLHSQIQHGGQMSELEYEMQKRIMALMNLSEDDYTMVFTANQLSAFK LVADSYPFQSNQNLLTVYDYENEAVKVMIESSKNKGARVMSAEFSWPSLRLKSGKLLKKVRRKRKNKRGLFVFPLQSRMTGARYSYLWMTMAQENGWHVL LDACGLGPKDMETLGLSLFKPDFLVCSFFKVFGENPSGFCCLFVKKSSSSILKDSTGTCIVRLVPARRPSQISEELANDDVETEERTKQEIHVDDNLQGS SSGPIFRQQTSEVTSDPQETKEISVKHEAPEIEESVASFESSKSQIIAGYGSGHSHLECRGLDHADSLGLILISTRARYLINWLVNALMSLQHPHSENRN PLVRIYGPKVKFDRGPAVAFNVFDWKGEKIDPSIVQKLADRNNISLSKGFLFHIWFPDEYEHEREQIIETRTSKGGKVLNGTREKLHSGISVVTASLGFL TNFEDIYRLWAFVSRFLDADFVEKERWRYTALNQMTIEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G51920			Pyridoxal phosphate (PLP)-depe...		Potri.003G120500 [exp]	0	1
AT2G29110		ATGLR2.8	glutamate receptor 2.8 (.1)		Potri.018G011500 [exp]	13.63	0.9491
AT2G45900			Phosphatidylinositol N-acetygl...		Potri.001G103400 [exp]	14.49	0.9545
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.011G149700 [exp]	17.86	0.9547
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.016G101600 [exp]	19.69	0.9640
AT1G69730			Wall-associated kinase family ...		Potri.001G040756 [exp]	22.71	0.9613
AT4G11650		ATOSM34	osmotin 34 (.1)		Potri.001G107950 [exp]	23.83	0.9609
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.001G451100 [exp]	25.09	0.9575	Pt-RCOMT1.5
					Potri.005G129050 [exp]	28.35	0.9485
AT4G10310		ATHKT1, HKT1	high-affinity K+ transporter 1...		Potri.018G147501 [exp]	32.09	0.9457
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Potri.001G134500 [exp]	32.24	0.9527

Compare expression of checked genes

Potri.003G120500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.