Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12580 605 / 0 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT1G18890 289 / 4e-91 CPK10, ATCDPK1, AtCPK10 calcium-dependent protein kinase 1 (.1) AT4G04720 286 / 4e-90 CPK21 calcium-dependent protein kinase 21 (.1) AT2G35890 285 / 5e-90 CPK25 calcium-dependent protein kinase 25 (.1) AT5G04870 286 / 1e-89 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT2G41860 285 / 1e-89 CPK14 calcium-dependent protein kinase 14 (.1.2) AT5G19360 284 / 1e-89 CPK34 calcium-dependent protein kinase 34 (.1) AT1G76040 285 / 2e-89 CPK29 calcium-dependent protein kinase 29 (.1.2) AT5G12180 284 / 2e-89 CPK17 calcium-dependent protein kinase 17 (.1) AT1G74740 284 / 2e-89 CDPK1A, CPK30, ATCPK30 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G136900 [exp] 647 / 0 AT1G12580 587 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.012G134600 [exp] 622 / 0 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.016G066700 [exp] 294 / 2e-92 AT3G10660 834 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Potri.008G014700 [exp] 293 / 2e-92 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.010G244800 [exp] 291 / 8e-92 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.012G071700 [exp] 288 / 1e-90 AT1G74740 931 / 0.0 CALCIUM-DEPENDENT PROTEIN KINASE 1A, calcium-dependent protein kinase 30 (.1) Potri.006G200600 [exp] 289 / 2e-90 AT5G04870 842 / 0.0 calcium dependent protein kinase 1 (.1) Potri.016G065700 [exp] 288 / 2e-90 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.006G199400 [exp] 288 / 2e-90 AT2G38910 899 / 0.0 calcium-dependent protein kinase 20 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038889 [exp] 555 / 0 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10015009 [exp] 554 / 0 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10013603 [exp] 301 / 1e-94 AT3G10660 803 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10021248 [exp] 298 / 1e-93 AT3G10660 809 / 0.0 calmodulin-domain protein kinase cdpk isoform 2 (.1) Lus10008958 [exp] 291 / 2e-92 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10033108 [exp] 287 / 5e-92 AT5G12480 598 / 0.0 calmodulin-domain protein kinase 7 (.1.2) Lus10028862 [exp] 291 / 2e-91 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10015992 [exp] 286 / 1e-89 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10029346 [exp] 283 / 2e-88 AT2G38910 834 / 0.0 calcium-dependent protein kinase 20 (.1) Lus10021531 [exp] 282 / 2e-88 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.003G120800.9 pacid=42786045 polypeptide=Potri.003G120800.9.p locus=Potri.003G120800 ID=Potri.003G120800.9.v4.1 annot-version=v4.1 ATGGACATAGCCAATAGCGACAACATTATACAGCCTTCAACATCTTGTCACTGCTACAGGATATCCAGCCTGACTGATACAATTTTGGACACGACTGAAG TGGCGAACTTGAAAGATCGGTATGTTCTTGGGGAGCAGTTGGGGTGGGGACAATTTGGTATCATAAGGGCATGCTCGGATAAGATGTCTGGTGAGGTTTT AGCTTGCAAATCTATTGCTAAAGATAGATTGGCCACACTCAATGATGTGCGCAGTGTAAAGCTTGAGATTGAAATAATGAGTAGGTTATCAGGGCATCCA AACGTTGTGAATCTCAAGGCAGTGTATGAGGAGGAGGATCATGTGCATCTTTTGATGGAATTGTGCGCAGGTGGGGAGCTTTTTCACCGACTTGAAAAGC ATGGTAGGTTCTCAGAACAAAATGCTCGTGTTATCTTTAGACATCTTATGCAAGTGGTTCAGTACTGTCATGAAAATGGCATCGTTCACAGAGATTTGAA GCCTGAAAACATTCTCTTAGCCACCAAGTCTTTATCATCACCAATTAAATTGGCTGACTTTGGTCTTGCAACTTACATCAAACCTGGGCATAATTTGCAT GGGACAGTTGGAAGTCCATTTTACATTGCTCCCGAGGTACTGGCTGGAGGTTATAACCAGGCTGCTGATGTGTGGAGTGCTGGTGTTATTCTTTACATTC TTCTAAGTGGGATGCCCCCATTTTGGGGGAAGAGCAAATCAAGGATCTTTGATGCAGTTAGGGCTGCAGAACTACGGTTCCCTCCCAAATTCTGGCATCA AATATCCACATCTGCCAAGGACTTGATCACTGGAATGCTCTGTAAAGATCCTTTCAAGAGGCTTAATACTGCGCAGGTGTTAGCTCACTCCTGGGTGCAG GATGGGGCACAACTAGCTCAAGAATCCAACATGCAGGACAACCTTAACTGTGAACAGCTAGAAATTTGTGGAGGTTCATTTTCTACCCCATTCATCGCCA AGGATCAAGCCTACAGCTTCACCTATGAATTGCCTGTAACTGGTGGGGATCAACAAGGGCACTCTCCTACACCCACATCATCATGTTCTTCCTTCCTAGT TAACGACAACACCCCTTGCTCTGCATCTGGAGGTTTTTCTTTTAGCAACCATGATGAACCAGGTGCAACAGAGTTCTCATCTCCCATTTTATCAATGCTA AGTTTTACCTTCTTTAGTCCTATCACTGAAGTTGATAAAGGAGATTTCTCGTTTGGTACTAAAGCCACCGAGTCGAAATGGGACGCAATACATGGAGAAT CAGTTCTGCGACAGCTCCCTGCATTGTCAGCTACTTCTGCTCCAGTTCACCGTGGAATAGAAGAAATGATGCAGAAGATAGAATTTCCACGGGAAGGGTG CAATGGGTTCAAATTATCCAGTATCCACAGCAGAAGAAATCACACCATAGGACTTGGCGAGCTCGATCAACTTAATATCATGGTCACCGAATCGGTTATT CGCTGGGCGTCGTGCACACATATCCCTACCGCCCCATCACTTAGATTATCACTTGTATGTTAG
AA sequence Show only first row Show all	>Potri.003G120800.9 pacid=42786045 polypeptide=Potri.003G120800.9.p locus=Potri.003G120800 ID=Potri.003G120800.9.v4.1 annot-version=v4.1 MDIANSDNIIQPSTSCHCYRISSLTDTILDTTEVANLKDRYVLGEQLGWGQFGIIRACSDKMSGEVLACKSIAKDRLATLNDVRSVKLEIEIMSRLSGHP NVVNLKAVYEEEDHVHLLMELCAGGELFHRLEKHGRFSEQNARVIFRHLMQVVQYCHENGIVHRDLKPENILLATKSLSSPIKLADFGLATYIKPGHNLH GTVGSPFYIAPEVLAGGYNQAADVWSAGVILYILLSGMPPFWGKSKSRIFDAVRAAELRFPPKFWHQISTSAKDLITGMLCKDPFKRLNTAQVLAHSWVQ DGAQLAQESNMQDNLNCEQLEICGGSFSTPFIAKDQAYSFTYELPVTGGDQQGHSPTPTSSCSSFLVNDNTPCSASGGFSFSNHDEPGATEFSSPILSML SFTFFSPITEVDKGDFSFGTKATESKWDAIHGESVLRQLPALSATSAPVHRGIEEMMQKIEFPREGCNGFKLSSIHSRRNHTIGLGELDQLNIMVTESVI RWASCTHIPTAPSLRLSLVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12580		PEPKR1	phosphoenolpyruvate carboxylas...		Potri.003G120800 [exp]	0	1
AT3G14200			Chaperone DnaJ-domain superfam...		Potri.001G164700 [exp]	2.00	0.8722
AT1G70100			unknown protein		Potri.008G192800 [exp]	2.82	0.8103
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Potri.005G204800 [exp]	3.74	0.8251
AT1G44960			SNARE associated Golgi protein...		Potri.003G159901 [exp]	7.07	0.8050
					Potri.004G059700 [exp]	11.22	0.7930
AT1G63770			Peptidase M1 family protein (....		Potri.001G101975 [exp]	18.76	0.7699
AT5G13640		PDAT1, ATPDAT	PHOSPHOLIPID:DIACYLGLYCEROL AC...		Potri.001G171000 [exp]	23.08	0.7844	Pt-ATPDAT.2
AT5G42220			Ubiquitin-like superfamily pro...		Potri.002G013500 [exp]	26.43	0.8155
					Potri.017G022262 [exp]	26.72	0.7773
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335200 [exp]	28.14	0.8043

Compare expression of checked genes

Potri.003G120800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.