Plant FIBer expression Database

Potri.003G120900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G11790 238 / 2e-73 Pleckstrin homology (PH) domain superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G111100
[exp]
394 / 2e-133 AT4G11790 246 / 9e-77 Pleckstrin homology (PH) domain superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029606
[exp]
297 / 2e-95 AT4G11790 329 / 2e-108 Pleckstrin homology (PH) domain superfamily protein (.1)
Lus10006338
[exp]
265 / 1e-82 AT4G11790 324 / 3e-106 Pleckstrin homology (PH) domain superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0266 PH PF00638 Ran_BP1 RanBP1 domain
Representative CDS sequence
>Potri.003G120900.2 pacid=42785691 polypeptide=Potri.003G120900.2.p locus=Potri.003G120900 ID=Potri.003G120900.2.v4.1 annot-version=v4.1
ATGAAAGGAGCGAAACGATTTGCAGTTTCAGACTCACTCCCTGACTCCAATGACACGGCATTGCGGAATAAAAGAATAATGGCAGGATTGCTATTTGATG
TTCATAGACCCGAACCATCTCAGCAACAATTGACTCCCCCGTTGGATGTGAAACGGGCTGAGTCATCACAGCATCACGTGAGAGCTCTCAATAATCAATT
TGCCAGTTGGGTTCAAACACAACTGAAGAACCATCCCGATGAACTTTGGGAAGATGGGATTCAAGACTACCTTGCTCATGCTTCAAACATTATGGAGATG
TTTAGTGATGTTGTCAACTGGCTTAAAGCAAATTCTGCAAAAGGAGGATCTGTTGCTGACTCTCTTACAACTGAAAAGAAATTAGTGCCTGAGATAAAGA
ATAATGAGAGCAAATTACTTCAAGAAAAAACTGGTTTTGCTCTACCAAGTACAAGTGCAAGCTTTACAAGTTCCTGGAGCTCTGGTGTGTTTTCTGCCAA
CCAAAGTTCTGGAGGAGTATCATCTAGTAGCCAAAGCTCTAGTTTATTCTCCAACGGTGAAAGCTCTGCTACATTCTCGAACAATCTAGGTTCTGGTTTG
TTCTCAAACAACCAAAGCTCTGGATTCTTCTCAAACAGTCAAACTTTTGGACTCTACTCCAACAATCAAAGCTCTGGCTCATTATCCAGCGGCCAAAGTT
GTGGAGCGTTCTCCAACAGTCAAACACCTTTCTCCATTAATCAAAGCACTGGAGCAGTCTCCAACAGCCAAAGTTTAGGAGCGCTCTCCAACAGTCAAAC
ACCTTTCTCCATTAATCAAAGCACTGGAGCATTCTCCAACAGTCAAACACCTTTCTCCTTTAATCAAAGCTCTGCAGCATTCTCTGAAAGCCAAAGTTTA
GGAGTGCTCTCCAACAGTCAAACACCTTTCTCATTTGGAGGTCAAAGCTCCATCCCCACAACCCATAACACTGCAGATGATGCTGATGATGAAAATGAAT
TACAGCAACCTGGCAGTCCATCTGTGAAGAAGTCTGTAGAGAAGGGTATTGTTACAGTCCATGAAGTCAAGTGCAAGCTCTATGTGAAGTCAAGTGATCC
AGCAGTTAAAGACACGTGGAAAGATAAAGGCACAGGGCAGCTTTCCATCAAATGCAAAGAGGGGATAAGCAAGGGCGCAAAAGAATCTAAACCAACAATT
GTTGTTCGAAATGATGTGGGAAAAGTGTTACTAAATGCTTTGCTCTATCCAGGAATCAAGACAAATCCACAGAAGAATTCCCTTGTTGCAATATTTCATA
CTGCGGGTGATGACAGTGGCAATAATGATAGTGTTGTGGCACGCACTTTTTTATTAAGGATGAGAACAGAGGAGGATCGGAATAAGTTAGCAACAGCAAT
CCAAGAATATGCTCCAACATCATGA
AA sequence
>Potri.003G120900.2 pacid=42785691 polypeptide=Potri.003G120900.2.p locus=Potri.003G120900 ID=Potri.003G120900.2.v4.1 annot-version=v4.1
MKGAKRFAVSDSLPDSNDTALRNKRIMAGLLFDVHRPEPSQQQLTPPLDVKRAESSQHHVRALNNQFASWVQTQLKNHPDELWEDGIQDYLAHASNIMEM
FSDVVNWLKANSAKGGSVADSLTTEKKLVPEIKNNESKLLQEKTGFALPSTSASFTSSWSSGVFSANQSSGGVSSSSQSSSLFSNGESSATFSNNLGSGL
FSNNQSSGFFSNSQTFGLYSNNQSSGSLSSGQSCGAFSNSQTPFSINQSTGAVSNSQSLGALSNSQTPFSINQSTGAFSNSQTPFSFNQSSAAFSESQSL
GVLSNSQTPFSFGGQSSIPTTHNTADDADDENELQQPGSPSVKKSVEKGIVTVHEVKCKLYVKSSDPAVKDTWKDKGTGQLSIKCKEGISKGAKESKPTI
VVRNDVGKVLLNALLYPGIKTNPQKNSLVAIFHTAGDDSGNNDSVVARTFLLRMRTEEDRNKLATAIQEYAPTS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G11790 Pleckstrin homology (PH) domai... Potri.003G120900
[exp]
0 1
AT4G31520 SDA1 family protein (.1) Potri.008G182900
[exp]
9.27 0.7819
AT4G07410 PCN POPCORN, Transducin family pro... Potri.014G014900
[exp]
10.00 0.7555
AT1G72320 APUM23 pumilio 23 (.1.2.3) Potri.003G073000
[exp]
17.23 0.7506
AT2G15790 CYP40, SQN SQUINT, CYCLOPHILIN 40, peptid... Potri.005G135500
[exp]
21.33 0.6995
AT3G07690 6-phosphogluconate dehydrogena... Potri.003G203800
[exp]
22.75 0.6961
AT2G33610 CHB2, ATSWI3B CHROMATIN REMODELING COMPLEX S... Potri.002G004800
[exp]
22.97 0.6389 (),CHB903,Pt-SWI3.1,of
AT1G06720 P-loop containing nucleoside t... Potri.017G017700
[exp]
24.00 0.7109
AT5G06280 unknown protein Potri.006G205200
[exp]
25.09 0.7018
AT4G04940 transducin family protein / WD... Potri.006G078900
[exp]
30.96 0.7210
AT1G47870 E2F_DP ATE2FC, ATE2F2,... ARABIDOPSIS THALIANA HOMOLOG O... Potri.002G023400
[exp]
31.22 0.5805 Pt-E2FC.1,E2Fc

Potri.003G120900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.