Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23010 527 / 0 ATUTR2, UTR2 UDP-galactose transporter 2 (.1.2.3) AT1G12600 519 / 0 UDP-N-acetylglucosamine (UAA) transporter family (.1) AT2G02810 80 / 1e-16 ATUTR1, UTR1 UDP-galactose transporter 1 (.1) AT1G14360 75 / 7e-15 ATUTR3, UTR3 UDP-galactose transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111000 [exp] 639 / 0 AT4G23010 527 / 0.0 UDP-galactose transporter 2 (.1.2.3) Potri.014G077500 [exp] 546 / 0 AT1G12600 566 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Potri.008G209501 [exp] 98 / 2e-25 ND / Potri.016G139100 [exp] 66 / 6e-12 AT1G14360 560 / 0.0 UDP-galactose transporter 3 (.1) Potri.006G110500 [exp] 66 / 7e-12 AT1G14360 538 / 0.0 UDP-galactose transporter 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029605 [exp] 574 / 0 AT1G12600 556 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10006337 [exp] 571 / 0 AT1G12600 555 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10009315 [exp] 541 / 0 AT1G12600 557 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10015850 [exp] 461 / 7e-164 AT1G12600 484 / 1e-173 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10030495 [exp] 77 / 1e-15 AT1G14360 587 / 0.0 UDP-galactose transporter 3 (.1) Lus10005881 [exp] 59 / 1e-09 AT5G59740 573 / 0.0 UDP-N-acetylglucosamine (UAA) transporter family (.1) Lus10012848 [exp] 54 / 1e-07 AT1G14360 570 / 0.0 UDP-galactose transporter 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF08449 [poplar] [flax] UAA UAA transporter family
Representative CDS sequence Show only first row Show all	>Potri.003G121000.3 pacid=42785082 polypeptide=Potri.003G121000.3.p locus=Potri.003G121000 ID=Potri.003G121000.3.v4.1 annot-version=v4.1 ATGAAGGGAGAGGATCAGACGAGGTATTTGTTCGGGATTTCTTTATCTGACCGGCCTAAATGGCAACAGTTTCTTATTTGCTCTTCCGGGTTCTTCTTTG GTTATCTCATTAATGGCATCTGCGAGGAATATGTGTATAATCGGCTCCAATTCAGCTATGGTTGGTATTTCACATTTGTACAAGGATTTGTGTACTTGGT GCTTATATACTTGCAGGGTTTCACCCCCAAGCAAATGGTGAACCCATGGAAAACTTATTGGAAACTCTCTGCTGTTCTTATGGGTTCTCATGGGTTGACT AAGGGGTCCCTGGCCTTTCTTAACTATCCAGCTCAAATCATGTTCAAATCCACCAAGGTACTGCCAGTCATGTTAATGGGAGCCTTCATTCCAGGATTGA GAAGAAAATATCCAGTTCACGAATACATATCAGCTCTGCTTCTGGTTATTGGTCTGATCCTTTTCACCTTGGCAGATGCTCAAACATCTCCAAATTTTAG TATAATTGGTGTGCTGATGATTTCTGGTGCTTTAATTATGGATTCTTTGATGGGTAATTTGCAAGAAGCAATTTTTACTATGAATCCTGACACCACGCAG ATCGAGGTGCTGTTCTGCTCGACAATTGTTGGATTGCCTTTCTTGCTTCCACCAATGATCCTGACTGGAGAGCTGTTTAAGGCTTGGAAATCCTGTGCTC AACATCCTTATGTGTATGGAGTGTTAGTATTTGAAGCCATGGCCACATTCGTTGGCCAAATTTCTGTTCTGTCCCTCATTGCCATTTTTGGCGCTGCTGC CACTGCCATGATAACAACAGCTAGAAAGGCAGTTACCTTGTTGCTGTCATACATGATATTCACAAAGCCATTAACTGAGCAGCATGGGACAGGGCTGCTA CTTCTGGCCATGGGAATAATATTGAAGATGGTTCCTGTAGATTACAAACCCCCCACTAGGAGTGCAGCTAGACATGGGAAGTCCCATTTCAAAGAAGAAA TAAGCCTAGGAGATAGTAGGAAAGCTGAAGGTGCTGAAGAAAAACGGCCCTTAGTGTGA
AA sequence Show only first row Show all	>Potri.003G121000.3 pacid=42785082 polypeptide=Potri.003G121000.3.p locus=Potri.003G121000 ID=Potri.003G121000.3.v4.1 annot-version=v4.1 MKGEDQTRYLFGISLSDRPKWQQFLICSSGFFFGYLINGICEEYVYNRLQFSYGWYFTFVQGFVYLVLIYLQGFTPKQMVNPWKTYWKLSAVLMGSHGLT KGSLAFLNYPAQIMFKSTKVLPVMLMGAFIPGLRRKYPVHEYISALLLVIGLILFTLADAQTSPNFSIIGVLMISGALIMDSLMGNLQEAIFTMNPDTTQ IEVLFCSTIVGLPFLLPPMILTGELFKAWKSCAQHPYVYGVLVFEAMATFVGQISVLSLIAIFGAAATAMITTARKAVTLLLSYMIFTKPLTEQHGTGLL LLAMGIILKMVPVDYKPPTRSAARHGKSHFKEEISLGDSRKAEGAEEKRPLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23010		ATUTR2, UTR2	UDP-galactose transporter 2 (....		Potri.003G121000 [exp]	0	1
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150100 [exp]	1.41	0.8845
AT1G79870			D-isomer specific 2-hydroxyaci...		Potri.013G046150 [exp]	1.73	0.8984
AT5G15080			Protein kinase superfamily pro...		Potri.017G077300 [exp]	3.16	0.8580
AT5G58130		ROS3	REPRESSOR OF SILENCING 3, RNA-...		Potri.018G151300 [exp]	4.00	0.8661
AT3G45880			2-oxoglutarate (2OG) and Fe(II...		Potri.009G025400 [exp]	5.19	0.8726
AT5G06100	MYB	ATMYB33	myb domain protein 33 (.1.2.3)		Potri.003G189700 [exp]	5.74	0.8406
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Potri.001G060000 [exp]	6.00	0.8417
AT2G31130			unknown protein		Potri.004G055300 [exp]	9.48	0.8543
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	10.19	0.8389
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Potri.019G031600 [exp]	10.72	0.8284

Compare expression of checked genes

Potri.003G121000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.