Plant FIBer expression Database

Potri.003G121100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G23020 94 / 2e-20 unknown protein
AT4G11780 74 / 4e-14 unknown protein
AT4G00770 51 / 1e-06 unknown protein
AT5G03670 45 / 7e-05 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G110900
[exp]
509 / 8e-179 AT4G23020 135 / 9e-35 unknown protein
Potri.002G152700
[exp]
78 / 4e-15 AT4G00770 114 / 1e-27 unknown protein
Potri.014G077400
[exp]
66 / 2e-11 AT4G00770 127 / 7e-32 unknown protein
Potri.006G115300
[exp]
47 / 3e-05 AT5G03670 199 / 4e-57 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10029604
[exp]
147 / 1e-38 AT4G23020 114 / 4e-27 unknown protein
Lus10006336
[exp]
119 / 5e-29 AT4G23020 141 / 5e-37 unknown protein
Lus10024488
[exp]
92 / 1e-19 AT4G11780 81 / 4e-16 unknown protein
PFAM info
Representative CDS sequence
>Potri.003G121100.1 pacid=42786316 polypeptide=Potri.003G121100.1.p locus=Potri.003G121100 ID=Potri.003G121100.1.v4.1 annot-version=v4.1
ATGGCTTCTTCTTCTATGATAAGCTCTTCTTCTTCTTGTAAACAAATACCCTTTTTGATCGAAAGAAAACCCTTGATGCTCAAAGATTATCTTCTTGATG
ATCTAAGTTCATGCTCATCCAAAGGCTTCAAGTCATTTCCTCGTAGTCACTGCTGTACAACCGTCCGATTTCTCCTCGAAGTCGACCACAAAACCAAACA
GCAGCGGCAGCAAAGGCAGCTTTACAAAAGAAGTAAATCATCAAAAGCAGCGTCTACAACAATATCAGCTCTTCAAAAAGCATCAGTTGCTGTTATCAAC
GCCGTTAAACTACTCCCATTTCCCTCCTCCAACTCCACCGTAAAGTCTCCGTCACCTTCAAGAACCAGAAAGGGGCTTTTACCTCGATGTCTTTCACGGA
AGCTGTTTAAGAAGAGCTTTTGGAGAAAAACACCTGATCACAATGGTCAATGTAAAGAAAGTAATGAGATCAGAGGGTGGAGATTGTTCCATGAGTTCTT
GGAGGAACAAGATAGACAGTCTGATCAAATCACCAGCAGAATTTCAACTAGTTCAAGAACCAGCAGCAACAGCAACAGTAACAGTAACGTTTGGACTACT
GAGAGTGAATCTACTGTTGGCAGTGGTAATTCTACTACGTCAGAGAGTTGTATAAGTGGCGCAAACGACGCCGTTTGTAATAATAAAGATCTAATCAAGG
AAGTCAGCGACAGAGTAGGCGTATCAGTCGGCCAGGATTCCATCACAAACAGAGAGGAGTGGCCAGATGACACGGAGAAGGAGCAATTCAGTCCGGTGTC
AATTCTGGATTGTCCATTCCAGGATGATGAAGAAGAGATTAGCTCTCCTTTCCATCGTAGTCCTATCCGCATGGAAGGGACTAAACAAAAGCTTATGCAA
AAGATCAGAAGGTTAGAGAGCCTCGCTCAACTAGACCCTGTAGACTTGGAAAAACGAATTGCGATGGCAGAGTTGGGGGATGAATCTCTTGAATCCCCAG
TGCAACATTGTTCAATGTCTATCAAAAGTGATAATAACGCCAATTTCAGTGAAGCGAAAGAAGAAAATGGAACAGAAAAGCATGCACAGGAGCTGCTCAA
GCAGGTCAAATCAACTATAGCATCACATAGCTTATCATCTAAGCTAGATAGTCTATTGGTAGACTTCTTCACAGAGAAAATTGTGGAAAACAATGCGAGT
GGAAGCGTGATCGGGTTATATAAAGAATTTGAGCAGGAGCTAGGAGTAGCACAGGATTGGATTAACGGGCAGCCTACAGAAATGTTTTTGGGGTGGGAGG
TGGTGGAGAGCAGGCATGCCTACCTTAAAGATATGGAGAAGAATGGGAAGTGGAAAAACGTGGATCAAGAAAAAGAAGAGTTTGCTTTGGAGTTGGAGGT
TGAGGTTTTTAATTCATTGGTAGACGAAGCTTTACTTGATTATATTCTAGCTAATTAA
AA sequence
>Potri.003G121100.1 pacid=42786316 polypeptide=Potri.003G121100.1.p locus=Potri.003G121100 ID=Potri.003G121100.1.v4.1 annot-version=v4.1
MASSSMISSSSSCKQIPFLIERKPLMLKDYLLDDLSSCSSKGFKSFPRSHCCTTVRFLLEVDHKTKQQRQQRQLYKRSKSSKAASTTISALQKASVAVIN
AVKLLPFPSSNSTVKSPSPSRTRKGLLPRCLSRKLFKKSFWRKTPDHNGQCKESNEIRGWRLFHEFLEEQDRQSDQITSRISTSSRTSSNSNSNSNVWTT
ESESTVGSGNSTTSESCISGANDAVCNNKDLIKEVSDRVGVSVGQDSITNREEWPDDTEKEQFSPVSILDCPFQDDEEEISSPFHRSPIRMEGTKQKLMQ
KIRRLESLAQLDPVDLEKRIAMAELGDESLESPVQHCSMSIKSDNNANFSEAKEENGTEKHAQELLKQVKSTIASHSLSSKLDSLLVDFFTEKIVENNAS
GSVIGLYKEFEQELGVAQDWINGQPTEMFLGWEVVESRHAYLKDMEKNGKWKNVDQEKEEFALELEVEVFNSLVDEALLDYILAN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G23020 unknown protein Potri.003G121100
[exp]
0 1
AT4G25240 SKS1 SKU5 similar 1 (.1) Potri.015G127200
[exp]
3.46 0.8048 SKS1.3
AT2G39050 ArathEULS3 Euonymus lectin S3, hydroxypro... Potri.013G054100
[exp]
4.79 0.7263
AT1G03230 Eukaryotic aspartyl protease f... Potri.019G064700
[exp]
6.00 0.8062
AT3G51060 SRS1, STY1 STYLISH 1, SHI RELATED SEQUENC... Potri.007G017500
[exp]
9.74 0.7325
AT3G16950 PTLPD1, LPD1 lipoamide dehydrogenase 1 (.1.... Potri.008G107600
[exp]
9.79 0.7247
AT1G62500 Bifunctional inhibitor/lipid-t... Potri.003G111300
[exp]
9.89 0.7676
AT1G45688 unknown protein Potri.007G045000
[exp]
18.16 0.7711
AT2G17120 LYM2 lysm domain GPI-anchored prote... Potri.004G183500
[exp]
21.21 0.7528
AT1G57820 ORTH2, VIM1 VARIANT IN METHYLATION 1, ORTH... Potri.003G162400
[exp]
21.90 0.7305
AT4G00820 IQD17 IQ-domain 17 (.1) Potri.011G153400
[exp]
22.58 0.7526

Potri.003G121100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.