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JGI Phytozome v13

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AspWood

Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT4G21480	551 / 0	STP12	sugar transporter protein 12 (.1)
AT1G11260	550 / 0	ATSTP1, STP1	sugar transporter 1 (.1)
AT3G19940	512 / 4e-179		Major facilitator superfamily protein (.1)
AT1G50310	511 / 1e-178	ATSTP9	sugar transporter 9 (.1)
AT5G23270	499 / 5e-174	ATSTP11, STP11	sugar transporter 11 (.1)
AT3G19930	493 / 2e-171	ATSTP4, STP4	sugar transporter 4 (.1)
AT5G26340	471 / 6e-163	ATSTP13, MSS1, STP13	SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
AT4G02050	466 / 5e-161	STP7	sugar transporter protein 7 (.1)
AT1G77210	417 / 4e-142	AtSTP14	sugar transport protein 14, sugar transporter 14 (.1.2)
AT5G61520	411 / 2e-140		Major facilitator superfamily protein (.1.2)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.001G110400 [exp]	811 / 0	AT1G11260	658 / 0.0	sugar transporter 1 (.1)
Potri.004G033600 [exp]	539 / 0	AT1G11260	822 / 0.0	sugar transporter 1 (.1)
Potri.011G042100 [exp]	533 / 0	AT1G11260	808 / 0.0	sugar transporter 1 (.1)
Potri.007G072800 [exp]	517 / 0	AT3G19940	672 / 0.0	Major facilitator superfamily protein (.1)
Potri.005G090700 [exp]	514 / 3e-180	AT3G19940	710 / 0.0	Major facilitator superfamily protein (.1)
Potri.007G073850 [exp]	498 / 8e-174	AT3G19940	699 / 0.0	Major facilitator superfamily protein (.1)
Potri.007G073800 [exp]	498 / 8e-174	AT3G19940	699 / 0.0	Major facilitator superfamily protein (.1)
Potri.007G073900 [exp]	494 / 2e-172	AT3G19940	706 / 0.0	Major facilitator superfamily protein (.1)
Potri.004G101900 [exp]	490 / 1e-170	AT1G11260	625 / 0.0	sugar transporter 1 (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10002597 [exp]	558 / 0	AT1G11260	798 / 0.0	sugar transporter 1 (.1)
Lus10018422 [exp]	556 / 0	AT1G11260	835 / 0.0	sugar transporter 1 (.1)
Lus10013441 [exp]	525 / 0	AT1G50310	731 / 0.0	sugar transporter 9 (.1)
Lus10010534 [exp]	469 / 8e-162	AT5G26340	902 / 0.0	SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
Lus10002450 [exp]	466 / 7e-161	AT5G26340	905 / 0.0	SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
Lus10040991 [exp]	463 / 1e-159	AT3G19940	666 / 0.0	Major facilitator superfamily protein (.1)
Lus10036325 [exp]	452 / 7e-156	AT4G02050	801 / 0.0	sugar transporter protein 7 (.1)
Lus10021924 [exp]	451 / 7e-155	AT5G26340	832 / 0.0	SUGAR TRANSPORT PROTEIN 13, Major facilitator superfamily protein (.1)
Lus10040993 [exp]	429 / 3e-148	AT1G50310	601 / 0.0	sugar transporter 9 (.1)
Lus10042516 [exp]	421 / 3e-143	AT1G11260	608 / 0.0	sugar transporter 1 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0015 [poplar] [flax]	MFS	PF07690 [poplar] [flax]	MFS_1	Major Facilitator Superfamily

Representative CDS sequence

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>Potri.003G121300.1 pacid=42784728 polypeptide=Potri.003G121300.1.p locus=Potri.003G121300 ID=Potri.003G121300.1.v4.1 annot-version=v4.1

ATGGATGTTTTCTTGAAGAAATTCTTTCCTGACGTTTACAAGAGGGAGTCCTCTGTCAAACCGTCAGATGATCAATACTGCAAGTTTGATAGCCAGATAT

TGACGTTGTTTACTTCGTCACTATATCTATCTGCCCTTGTTTCGTCCATATTTGCATCCATGGCAACTCGCAAGTATGGACGGAGACCTACGATGATGAC

TAGTGGCTTACTTTTCGCTGCTGGTGCTATCGTTAATGGCTTAGCCATGAATGTTCCCATGCTTATTATTGGTCGGCTGTTACTTGGTTTCGGCATTGGA

TGCGCCAATCAGTCAGTGCCAATTTATCTCTCTGAAGTGGCTCCCTATAAATATCGAGGTGCTCTCAATATGACGTTCCAATTGTTTATCACAATTGGTA

TTCTCATCGCCAATTTTTTGAATTTTGCCTTTGCTAAGTGGATTGAAGGAGAAATGGCATGGCGCTTGAACTTGGGTGGCGTTATAGTTCCTGGTCTGAT

AATTTTTATTGGATCATGCCTTCTTCCTGATACTCCGAATTCCGAGATAGAACGGGGCAATTATGATAGAGCTAAAGAACAACTTCTTAAGCTCCGCAAA

GTTGATAATGTTGATGAGGAGTTCAATGATCTTGTCGAGGCTAGTGAGAAAGCAAAACTGGTCCAACATGCTTGGTTAAACATATTTGAAAGGAAGTATA

GGCCTCAGCTTTTCTTTGCGTTCTGCATTCCCATGTTTCAACAACTCACTGGCATGAACGTGATCGTGTTTTATGCACCTATTCTGTTCAAAACCATTGG

TTTTGGGAGCAATGCTTCTCTTTTTTCTTCTCTCATTACTGGTATTGTTAACATGCTTGCAACTTTTGTTTCAATTTCAACGGTGGATAAGTTTGGAAGG

AAAAAGCTTTTCCTCTACGGTGGTCTCCAAATGCTCGTTTCCCAGATTGTCATAACAATTGCCATTGCTATGAAGTTCGGATTGAGTGGAAACCCAGGTG

TGATTTCTAATGGATATGCTTATACCGTGGTAGTCTTCATATGTGTTTATGTTGCCGCCTTTGCTTGGTCATGGGGACCTCTAGGTTGGTTAGTGCCTAG

TGAGATCTTCCCATTGGAAGTCCGTTCAACTGCCCAAAGTATCACTGTTTCTGTAAACATGATCATCACCTTCGTAATCGCACAAATCTTCACGGCAATG

CTTTGTCACTTGAAGTTCGGTTTGTTTATCTGCTTTGCTGTCTGCGTGATTGTCATGAGCATCGTCATATACAAACTGCTGCCTGAGACTAAAGGTGTCC

CAATTGAAGAAATGACCACTGTGTGGCGCAATCATCCTCACTGGAGCAAGTATTTTTATGAAGATGATGCTAAGTTTGAAACGAACAAGTCCATAGTTAT

TGGGATTTTATTGAGTTTATTTCTTGTTTTTATTCTGAGACTTGCTTAG

AA sequence

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>Potri.003G121300.1 pacid=42784728 polypeptide=Potri.003G121300.1.p locus=Potri.003G121300 ID=Potri.003G121300.1.v4.1 annot-version=v4.1

MDVFLKKFFPDVYKRESSVKPSDDQYCKFDSQILTLFTSSLYLSALVSSIFASMATRKYGRRPTMMTSGLLFAAGAIVNGLAMNVPMLIIGRLLLGFGIG

CANQSVPIYLSEVAPYKYRGALNMTFQLFITIGILIANFLNFAFAKWIEGEMAWRLNLGGVIVPGLIIFIGSCLLPDTPNSEIERGNYDRAKEQLLKLRK

VDNVDEEFNDLVEASEKAKLVQHAWLNIFERKYRPQLFFAFCIPMFQQLTGMNVIVFYAPILFKTIGFGSNASLFSSLITGIVNMLATFVSISTVDKFGR

KKLFLYGGLQMLVSQIVITIAIAMKFGLSGNPGVISNGYAYTVVVFICVYVAAFAWSWGPLGWLVPSEIFPLEVRSTAQSITVSVNMIITFVIAQIFTAM

LCHLKFGLFICFAVCVIVMSIVIYKLLPETKGVPIEEMTTVWRNHPHWSKYFYEDDAKFETNKSIVIGILLSLFLVFILRLA

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21480		STP12	sugar transporter protein 12 (...		Potri.003G121300 [exp]	0	1

Potri.003G121300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Potri.003G121300 [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.003G121300 coexpression network