Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23030 634 / 0 MATE efflux family protein (.1) AT1G58340 548 / 0 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT5G52050 547 / 0 MATE efflux family protein (.1) AT4G29140 541 / 0 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT5G19700 523 / 0 MATE efflux family protein (.1) AT2G38510 468 / 9e-162 MATE efflux family protein (.1) AT1G71870 462 / 4e-159 MATE efflux family protein (.1) AT5G49130 404 / 3e-136 MATE efflux family protein (.1) AT4G22790 297 / 5e-95 MATE efflux family protein (.1) AT5G52450 265 / 1e-82 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G133500 [exp] 797 / 0 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 785 / 0 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.002G107200 [exp] 592 / 0 AT1G58340 600 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.007G043100 [exp] 509 / 3e-177 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.013G115600 [exp] 470 / 2e-162 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 470 / 3e-162 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.016G134800 [exp] 468 / 7e-161 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.010G011400 [exp] 436 / 9e-149 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.012G051900 [exp] 319 / 2e-103 AT5G52450 644 / 0.0 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017836 [exp] 736 / 0 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 709 / 0 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10007231 [exp] 585 / 0 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10012944 [exp] 499 / 3e-173 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10028230 [exp] 491 / 1e-169 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10025237 [exp] 444 / 6e-151 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10009788 [exp] 395 / 6e-133 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 380 / 5e-128 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10038987 [exp] 353 / 2e-116 AT1G71870 527 / 0.0 MATE efflux family protein (.1) Lus10007006 [exp] 304 / 2e-97 AT4G22790 549 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.003G121400.1 pacid=42785085 polypeptide=Potri.003G121400.1.p locus=Potri.003G121400 ID=Potri.003G121400.1.v4.1 annot-version=v4.1 ATGTGCCAGTTATCTTCACCTTCTCATTCTTGCAAATGCAAAATAGACCCATCATCCAAAGTACAGGAATCTGACAGGCTAATAACGGCTTTGATCCCCA AGGACCCAACATTTGAAAATCAACAGAGGACTCACCTCGCTCTTGCAATCAGAGAAGCAAGATGCATAGCCAACATAGCACTTCCAATGATATTAACTGG TCTTTTACTCTATTCTCGCTCCATGATCTCCATGCTCTTTCTCGGTCGCCAAGGAGAACTGGCTTTAGCAGGTGGCTCGCTGGCAATTGGGTTTGCTAAC ATCACCGGCTACTCTATTCTCTCCGGTCTTTCCATGGGAATGGAACCCATTTGTGGACAGGCTTTTGGTGCCAAAAGATACAAACTTCTTGGCCTCGCAT TGCAAAGAACAATTCTTTTGCTTTTTTTAGTTTCCATCCCTATTGCTTTATTGTGGTTCAACATGAAAAAGATCCTTCTCTTTTGTGGTCAAGAAGATGA TATTTCCACGGAAGCACAACTCTACATTCTTTACTCCCTCCCTGACCTTGTTGCTCAATCCATTTTGCATCCTTTGCGTATATATCTCAGGAGTCAGTCA ATTACTCTGCCTCTAACATTTTGTGCAACCCTTTCTATTCTTCTTCACATACCTGTTAACTACCTTCTTGTCTCCGTATTCAATCTTGGAATCAAAGGCG TTGCGTTAGGCGCAGTTTGGACCAACTTCAGTCTTGTAGGATCATTGGTCATTTACGTTATGATCTCTGGCGTGTCCAAGAAAACTTGGGGTGGGATATC ATTGGAATGCTTAAAAGGGTGGAGATCTTTATTGAATTTGGCAATTCCAAGCTGCATTTCGGTTTGCCTTGAATGGTGGTGGTATGAGATCATGATTTTA CTCTGTGGGCTATTGTTAAATCCAACAGCTACCGTTGCTTCAATGGGAATCTTAATTCAAACCACAGCTTTTATATACATTTTCCCATCTTCTTTGAGCT TTGGTGTGTCAACAAGAGTTGGCAATGAACTAGGTGCTAATAATCCTCAAAAGGCCAAGCTTGCTGCTACTGTTGGTCTCTCTTCAAGCTTTGTCTTGGG ATTTGCAGCATTGTGTTTTGCTGTCATGGTGAGGAAGATTTGGGCTAGCATGTTCACTCAAGATGCAGAGATTATTGCATTGACATCAATGGTTTTGCCT ATAATTGGCCTTTGTGAGCTTGGAAATTGCCCGCAAACAACAGGTTGTGGTGTTTTGAGAGGCACGGCAAGGCCTAAAATAGGTGCAAATATCAATTTGG GATGCTTTTACCTTGTGGGCATGCCTGTTGCTGTTTGGTTGAGTTTTTATGCTGGCTTTGATTTTAAAGGACTCTGGTTGGGTTTGTTAGCTGCCCAGGG CTCATGTGTCGTGACCATGTTGTTCGTTCTGGCTAGAACAGATTGGGAATGCCAAGCCCAGAGAGCCAAGGAACTAACTGGAAATGTATCTAACGATGCT GACCACAACGAAGAGGATGAGAAGTTGAAAGATCCCAAGAATTCATCCAGCTCATTAGATGGTAATGATTCATTGGTTTGA
AA sequence Show only first row Show all	>Potri.003G121400.1 pacid=42785085 polypeptide=Potri.003G121400.1.p locus=Potri.003G121400 ID=Potri.003G121400.1.v4.1 annot-version=v4.1 MCQLSSPSHSCKCKIDPSSKVQESDRLITALIPKDPTFENQQRTHLALAIREARCIANIALPMILTGLLLYSRSMISMLFLGRQGELALAGGSLAIGFAN ITGYSILSGLSMGMEPICGQAFGAKRYKLLGLALQRTILLLFLVSIPIALLWFNMKKILLFCGQEDDISTEAQLYILYSLPDLVAQSILHPLRIYLRSQS ITLPLTFCATLSILLHIPVNYLLVSVFNLGIKGVALGAVWTNFSLVGSLVIYVMISGVSKKTWGGISLECLKGWRSLLNLAIPSCISVCLEWWWYEIMIL LCGLLLNPTATVASMGILIQTTAFIYIFPSSLSFGVSTRVGNELGANNPQKAKLAATVGLSSSFVLGFAALCFAVMVRKIWASMFTQDAEIIALTSMVLP IIGLCELGNCPQTTGCGVLRGTARPKIGANINLGCFYLVGMPVAVWLSFYAGFDFKGLWLGLLAAQGSCVVTMLFVLARTDWECQAQRAKELTGNVSNDA DHNEEDEKLKDPKNSSSSLDGNDSLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23030			MATE efflux family protein (.1...		Potri.003G121400 [exp]	0	1
AT4G20970	bHLH	bHLH162	basic helix-loop-helix (bHLH) ...		Potri.013G129800 [exp]	5.91	0.8979
AT1G22810	AP2_ERF		Integrase-type DNA-binding sup...		Potri.013G100300 [exp]	7.93	0.8762
AT1G33760	AP2_ERF		Integrase-type DNA-binding sup...		Potri.019G075600 [exp]	8.94	0.8727	DREB53
					Potri.010G150750 [exp]	9.38	0.8971
AT5G66580			unknown protein		Potri.004G149800 [exp]	15.87	0.8132
AT5G36930			Disease resistance protein (TI...		Potri.019G007884 [exp]	17.54	0.8656
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Potri.016G066700 [exp]	18.73	0.8665	Pt-CDPK5.5,CPK19
AT2G01670		ATNUDT17	nudix hydrolase homolog 17 (.1...		Potri.008G134000 [exp]	21.21	0.8658
					Potri.010G078950 [exp]	23.66	0.8700
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Potri.009G010200 [exp]	25.29	0.8730

Compare expression of checked genes

Potri.003G121400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.