Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20360 714 / 0 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 479 / 4e-167 GTP binding Elongation factor Tu family protein (.1) AT1G07920 144 / 8e-38 GTP binding Elongation factor Tu family protein (.1) AT1G07930 144 / 8e-38 GTP binding Elongation factor Tu family protein (.1.2) AT1G07940 144 / 8e-38 GTP binding Elongation factor Tu family protein (.1.2) AT5G60390 144 / 8e-38 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G18070 120 / 3e-29 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G10630 108 / 4e-25 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT2G31060 75 / 5e-14 EMB2785 EMBRYO DEFECTIVE 2785, elongation factor family protein (.1.2.3) AT1G04170 63 / 2e-10 EIF2 GAMMA, EIF2GAMMA eukaryotic translation initiation factor 2 gamma subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110200 [exp] 765 / 0 AT4G20360 716 / 0.0 RAB GTPase homolog E1B (.1) Potri.002G215900 [exp] 476 / 3e-166 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.014G138100 [exp] 474 / 2e-165 AT4G02930 752 / 0.0 GTP binding Elongation factor Tu family protein (.1) Potri.006G130900 [exp] 151 / 2e-40 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 149 / 6e-40 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 149 / 7e-40 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 149 / 7e-40 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 149 / 7e-40 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G043100 [exp] 149 / 8e-40 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043342 [exp] 695 / 0 AT4G20360 758 / 0.0 RAB GTPase homolog E1B (.1) Lus10017957 [exp] 691 / 0 AT4G20360 759 / 0.0 RAB GTPase homolog E1B (.1) Lus10041946 [exp] 684 / 0 AT4G20360 754 / 0.0 RAB GTPase homolog E1B (.1) Lus10019493 [exp] 640 / 0 AT4G20360 668 / 0.0 RAB GTPase homolog E1B (.1) Lus10027995 [exp] 472 / 1e-163 AT4G02930 763 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10008161 [exp] 471 / 2e-162 AT4G02930 759 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10040378 [exp] 149 / 1e-39 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 149 / 1e-39 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10019918 [exp] 147 / 4e-39 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10023174 [exp] 140 / 2e-36 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain CL0023 [poplar] [flax] PF03143 [poplar] [flax] GTP_EFTU_D3 Elongation factor Tu C-terminal domain CL0575 [poplar] [flax] EFTPs PF03144 [poplar] [flax] GTP_EFTU_D2 Elongation factor Tu domain 2
Representative CDS sequence Show only first row Show all	>Potri.003G121600.1 pacid=42784802 polypeptide=Potri.003G121600.1.p locus=Potri.003G121600 ID=Potri.003G121600.1.v4.1 annot-version=v4.1 ATGGCTATTTCCGCCTCAACAACTACTTTCACCTCCACAAACCTCCTCTACCCCCACCACTCAACCACCACATCCACCACATCCACCCCTACTTTCTCCC TAACACCCACCTCGAAACTCCCCTCAAAATCCATCCTTTCGTCTTCTTTTCTCCCCACCCTCACTCCCACCTCCTCATCCTCCCCTCTCACCACCACCCG CCACCGCTTTCTCACTGTCCGTGCAGCTAGAGGGAAGTTCGAAAGAAAGAAACCCCATGTCAACATTGGCACAATAGGCCATGTAGACCACGGCAAAACA ACTCTCACCGCTGCTCTAACCATGGCTTTAGCCTCAATGGGCGGCAGTGCACCAAAAAAATACGATGAAATCGATGCTGCACCTGAAGAACGCGCTAGAG GAATCACAATTAACACTGCTACTGTTGAATATGAGACGGAATCTCGCCATTATGCTCATGTCGATTGTCCTGGTCATGCTGATTATGTTAAGAACATGAT TACTGGTGCTGCTCAAATGGATGGAGCTATTCTTGTTGTGTCTGGCGCTGATGGTCCAATGCCACAAACAAAAGAGCATATCTTGTTGGCAAAGCAAGTT GGGGTTCCAAATATGGTTGTGTTTTTGAATAAACAAGATCAAGTTGATGATGAGGAGCTGTTGCAGTTGGTAGAGTTGGAGGTAAGAGAATTGTTGTCTA GTTATGAGTTTCCTGGTGATGATATTCCAATTATTTCTGGTTCTGCCTTGTTAGCTTTAGAGGCTTTGATGGAAAATCCGGCTATTAAGAGAGGAGAGAA TCAATGGGTTGATAAAATATATGAACTTATGGATAATGTTGATAATTATATACCAATTCCTCAAAGGCAAACTGATTTGCCATTTTTACTTGCCGTTGAG GATGTTTTTTCTATTACTGGTCGTGGGACTGTAGCTACCGGGAGGGTTGAGAGAGGGACAATTAAAACTGGGGATACAGTAGATATTGTGGGGTTGAGGG AGACTAGGAATGTAACAGTTACTGGTGTGGAAATGTTTCAAAAGATATTGGATGAAGCATTGGCAGGTGATAATGTTGGGTTGTTATTGAGAGGTGTTCA AAAGGCTGATATTCAGAGAGGGATGGTTTTGTCGAAGCCAGGGTCAATTACTCCACATACCAAGTTTGAGGCGATTGTTTATGTTTTGAAGAAGGAAGAA GGTGGTAGGCATTCTCCCTTCTTTGCTGGGTATAGGCCTCAATTTTATATGAGGACAACTGATGTTACAGGGAGGGTGGCTACAATTATGAATGATAAGG ATGAGGAGTCGAAGATGGTTATGCCTGGGGATCGTGTGAAGATGGTGGTGGAACTTATTATGCCTGTGGCTTGTGAGCAAGGTATGAGGTTTGCTATCAG AGAAGGAGGGAAGACTGTTGGAGCCGGTGTTATCCAGTCCATTATTGAGTAG
AA sequence Show only first row Show all	>Potri.003G121600.1 pacid=42784802 polypeptide=Potri.003G121600.1.p locus=Potri.003G121600 ID=Potri.003G121600.1.v4.1 annot-version=v4.1 MAISASTTTFTSTNLLYPHHSTTTSTTSTPTFSLTPTSKLPSKSILSSSFLPTLTPTSSSSPLTTTRHRFLTVRAARGKFERKKPHVNIGTIGHVDHGKT TLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV GVPNMVVFLNKQDQVDDEELLQLVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPAIKRGENQWVDKIYELMDNVDNYIPIPQRQTDLPFLLAVE DVFSITGRGTVATGRVERGTIKTGDTVDIVGLRETRNVTVTGVEMFQKILDEALAGDNVGLLLRGVQKADIQRGMVLSKPGSITPHTKFEAIVYVLKKEE GGRHSPFFAGYRPQFYMRTTDVTGRVATIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGAGVIQSIIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Potri.003G121600 [exp]	0	1
AT1G74880		NdhO, NDH-O	NADH dehydrogenase-like comple...		Potri.007G106500 [exp]	1.00	0.9925
AT1G14345			NAD(P)-linked oxidoreductase s...		Potri.010G093300 [exp]	1.41	0.9895
AT4G17560			Ribosomal protein L19 family p...		Potri.001G152200 [exp]	3.16	0.9881
ATCG00900		ATCG00900.1, RP...	CHLOROPLAST RIBOSOMAL PROTEIN ...		Potri.004G140500 [exp]	4.00	0.9891
AT3G27830		RPL12-A	ribosomal protein L12-A (.1)		Potri.001G346100 [exp]	4.89	0.9876	Pt-RPL12.6
AT5G20935			unknown protein		Potri.009G155300 [exp]	6.48	0.9871
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.007G071300 [exp]	6.70	0.9857
AT2G43030			Ribosomal protein L3 family pr...		Potri.013G070100 [exp]	6.92	0.9843
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.010G215900 [exp]	6.92	0.9871
AT2G34860		EDA3	embryo sac development arrest ...		Potri.001G009800 [exp]	8.36	0.9838

Compare expression of checked genes

Potri.003G121600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.