Plant FIBer expression Database

Potri.003G121700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12640 717 / 0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
AT1G63050 697 / 0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G110100
[exp]
844 / 0 AT1G12640 731 / 0.0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006325
[exp]
704 / 0 AT1G12640 694 / 0.0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
Lus10029595
[exp]
681 / 0 AT1G12640 679 / 0.0 MBOAT (membrane bound O-acyl transferase) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0517 MBOAT-like PF03062 MBOAT MBOAT, membrane-bound O-acyltransferase family
Representative CDS sequence
>Potri.003G121700.1 pacid=42786854 polypeptide=Potri.003G121700.1.p locus=Potri.003G121700 ID=Potri.003G121700.1.v4.1 annot-version=v4.1
ATGCCTTTTGAAATGGAATCCATGGCCGCCGCTATTGGCGTCTCCGTACCAGTTTTGAGGTTCCTTCTTTGCTTTGTGGTCACAATTCCAGTGAGTTTCA
TCCACCGATTCGTACCGAGTTCATTCGGCAAACATTTATACGCTGCTATTTCAGGGGCTTTCCTCTCGTATTTATCATTTGGGTTCTCTTCAAATCTTCA
CTTCTTGGTGCCCATGTTGTTGGGCTACCTTTCGATGGTCCTGTTTCGGCCTTACTGTGGAATCCTTACGTTTTTATTTGGATTCGGCTATTTAATTGGC
TGCCATGTGTATTACATGAGTGGTGATGCGTGGAAGGAAGGAGGCATTGATGCCACTGGGGCTTTAATGGTGTTAACACTGAAAGTCATATCATGCGCCA
TGAATTACAATGATGGACTATTAAAAGAGGAAGAATTGCGAGAGGTTCAGAAGAAAAACCGCTTGATTAAGCTGCCCTCTTTTATTGAGTATGTTGGTTA
CTGCCTCTGTTGCGGTAGCCACTTTGCTGGTCCAGTTTATGAAATGAAGGATTATCTTGAGTGGACTGAAAGAAAAGGGATTTGGGCCCCTAGTGAGAAA
GGACCCTCACCATCACCTTTCGGGGCAACAATTCGAGCTCTTTTCCAAGCTGCTGTTTGCATGGCCTTGTATCTGTACCTGATACCCCAGTATAACATAC
CCGGGCTCAATGGTCCAGCATACAAAGGATGGGGCTTCTGGAAACGGTTGGGTTACCAGTATATGTCAGGCTTCACAGCACGATGGAAATATTATTTCAT
CTGGTCAATTTCAGAGGCAGCTATTATTGTCTCTGGCCTGGGTTTAAGTGGTTGGACAGAGACTTCTCCACCAAGGCCACAATGGGATCGTGCGAAAAAT
GTTGATGTTCTAGGTGTTGAGTTTGCTAAGAGTGCAGTTCAGTTGCCACTTGTATGGAATATACAAGTCAGCACTTGGCTTCGTCATTATGTTTATGATA
GACTTGTTCAGAAGGGGAAGAAACCTGGTTTCTTTCAGTTGTTAGCCACACAGACTACCAGTGCTGTTTGGCATGGATTATATCCTGGGTACATAATATT
CTTTGTCCAGTCAGCGTTGATGATTGCTGGTTCAAGGGTCCTATACAGATGGCAACAAACTATACCTCCAAATATGGCTCTGGTGAAGAAGTTGCTTGTT
TTTATTAACGTTGCTTACACCATTCTGGTTCTAAACTATTCTGCTGTTGGTTTCATGGTATTAAGCTTGCAGGAAACAATTGCTTTATATGGTAGTGTAT
ATTACATTGGAACCATTGTACCCATATCATTGATCCTCCTTGGCAACATAATTAAACCAGCAAAGCCTGCCAGATCTAAAGCCCGGAAGGAACAGTGA
AA sequence
>Potri.003G121700.1 pacid=42786854 polypeptide=Potri.003G121700.1.p locus=Potri.003G121700 ID=Potri.003G121700.1.v4.1 annot-version=v4.1
MPFEMESMAAAIGVSVPVLRFLLCFVVTIPVSFIHRFVPSSFGKHLYAAISGAFLSYLSFGFSSNLHFLVPMLLGYLSMVLFRPYCGILTFLFGFGYLIG
CHVYYMSGDAWKEGGIDATGALMVLTLKVISCAMNYNDGLLKEEELREVQKKNRLIKLPSFIEYVGYCLCCGSHFAGPVYEMKDYLEWTERKGIWAPSEK
GPSPSPFGATIRALFQAAVCMALYLYLIPQYNIPGLNGPAYKGWGFWKRLGYQYMSGFTARWKYYFIWSISEAAIIVSGLGLSGWTETSPPRPQWDRAKN
VDVLGVEFAKSAVQLPLVWNIQVSTWLRHYVYDRLVQKGKKPGFFQLLATQTTSAVWHGLYPGYIIFFVQSALMIAGSRVLYRWQQTIPPNMALVKKLLV
FINVAYTILVLNYSAVGFMVLSLQETIALYGSVYYIGTIVPISLILLGNIIKPAKPARSKARKEQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12640 MBOAT (membrane bound O-acyl t... Potri.003G121700
[exp]
0 1
AT3G02580 BUL1, DWF7, STE... DWARF 7, BOULE 1, sterol 1 (.1... Potri.017G116600
[exp]
10.39 0.6841 DWF7.3
AT5G03870 Glutaredoxin family protein (.... Potri.016G079400
[exp]
10.95 0.6653
AT2G06050 AtOPR3, DDE1, O... DELAYED DEHISCENCE 1, oxophyto... Potri.018G065600
[exp]
12.88 0.7779 OPR3.2
AT5G15240 Transmembrane amino acid trans... Potri.017G083500
[exp]
18.41 0.7232
AT5G33280 Voltage-gated chloride channel... Potri.018G124100
[exp]
22.36 0.7322
AT1G05200 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) Potri.014G152200
[exp]
27.49 0.5709
Potri.008G127651
[exp]
30.29 0.6119
AT1G19920 ASA1, APS2 ATP SULFURYLASE ARABIDOPSIS 1,... Potri.002G024200
[exp]
30.82 0.6702
AT5G05580 AtFAD8, SH1, FA... fatty acid desaturase 8 (.1.2) Potri.016G117500
[exp]
47.58 0.6906 Pt-FAD3.5
AT3G12500 PR-3, PR3, CHI-... PATHOGENESIS-RELATED 3, basic ... Potri.009G142300
[exp]
48.92 0.6895

Potri.003G121700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.