Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26965 217 / 9e-73 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2) AT3G03100 41 / 9e-05 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109600 [exp] 301 / 9e-106 AT4G26965 198 / 2e-65 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2) Potri.019G051400 [exp] 42 / 6e-05 AT3G03100 269 / 1e-93 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032642 [exp] 177 / 2e-56 AT4G26965 155 / 4e-48 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2) Lus10030358 [exp] 41 / 0.0001 AT3G03100 263 / 1e-91 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2) Lus10007886 [exp] 40 / 0.0002 AT3G03100 236 / 5e-81 NADH:ubiquinone oxidoreductase, 17.2kDa subunit (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05071 [poplar] [flax] NDUFA12 NADH ubiquinone oxidoreductase subunit NDUFA12
Representative CDS sequence Show only first row Show all	>Potri.003G122100.1 pacid=42784609 polypeptide=Potri.003G122100.1.p locus=Potri.003G122100 ID=Potri.003G122100.1.v4.1 annot-version=v4.1 ATGTCAAAGCTGTTGGCACGGATTGCTGGGTACTTGAGCAACCGAACTTTGGTGGGTGTAGACAAAGTAGGTAACCGTTACTTCACCAGAACAGAAGAGA TCGATGGTATCATGAAAGAGAAAAGATGGGTAGTATTCAAAGGGGAGGAGGATCCAACCTCACTTCCAGTTGAATGGATATGCTGGTTGAATGGACAGCG TAAAAGGGCTCCAACTCCTGAGGAACTGATTGAGATGGAGGCTAGGCGTGAACTTGTGAAGCAGAATGTGGCTCTTCTCAAGCAAGAAGAAGAGGAAAGG AGAGCCAGAGAAGGCAGTTCTTGTAAATCCACAAGCGCTGGTAAAACTGGAGGTCCAGACTTGAAAAGTTTCATTCGCCAATTTCCTACTGCTTCTGAGG GTAACAAACTTGAGGAAGAATCAGATGCAGTGGATAGAGCAAGAGAGGGAGAAGCTGGGGGAAAGAAAGCAAAAGAACCTTTGTCAGAGCATTCAGAACC AACTGGATCTGGTTCAACCTTCAAGCCAGGGACATGGCAACCACCGACATGA
AA sequence Show only first row Show all	>Potri.003G122100.1 pacid=42784609 polypeptide=Potri.003G122100.1.p locus=Potri.003G122100 ID=Potri.003G122100.1.v4.1 annot-version=v4.1 MSKLLARIAGYLSNRTLVGVDKVGNRYFTRTEEIDGIMKEKRWVVFKGEEDPTSLPVEWICWLNGQRKRAPTPEELIEMEARRELVKQNVALLKQEEEER RAREGSSCKSTSAGKTGGPDLKSFIRQFPTASEGNKLEEESDAVDRAREGEAGGKKAKEPLSEHSEPTGSGSTFKPGTWQPPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26965			NADH:ubiquinone oxidoreductase...		Potri.003G122100 [exp]	0	1
AT3G29180			Protein of unknown function (D...		Potri.017G088000 [exp]	3.16	0.9164
AT1G10650			SBP (S-ribonuclease binding pr...		Potri.010G042200 [exp]	7.07	0.9073
AT3G54120			Reticulon family protein (.1)		Potri.016G110200 [exp]	7.28	0.9211
AT1G18290			unknown protein		Potri.012G045600 [exp]	10.95	0.9048
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.001G214201 [exp]	11.22	0.8952
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.011G005200 [exp]	12.48	0.8890
AT1G29200			O-fucosyltransferase family pr...		Potri.011G068300 [exp]	12.72	0.9149
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.010G154700 [exp]	12.96	0.8879
AT2G03350			Protein of unknown function, D...		Potri.008G092500 [exp]	14.42	0.9123
AT3G03800		ATSYP131, SYP13...	syntaxin of plants 131 (.1)		Potri.019G036700 [exp]	17.32	0.8991	SYP131.2

Compare expression of checked genes

Potri.003G122100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.