Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G11740 409 / 1e-136 SAY1 Ubiquitin-like superfamily protein (.1) AT4G23040 222 / 4e-65 Ubiquitin-like superfamily protein (.1) AT4G00752 133 / 2e-33 UBX domain-containing protein (.1) AT4G10790 52 / 8e-07 UBX domain-containing protein (.1) AT2G43210 49 / 7e-06 Ubiquitin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109500 [exp] 774 / 0 AT4G11740 429 / 2e-144 Ubiquitin-like superfamily protein (.1) Potri.014G075600 [exp] 144 / 3e-37 AT4G00752 273 / 8e-87 UBX domain-containing protein (.1) Potri.015G080200 [exp] 63 / 2e-10 AT4G10790 229 / 1e-70 UBX domain-containing protein (.1) Potri.017G036600 [exp] 54 / 2e-07 AT2G43210 369 / 5e-122 Ubiquitin-like superfamily protein (.1.2) Potri.003G145200 [exp] 54 / 2e-07 AT4G10790 552 / 0.0 UBX domain-containing protein (.1) Potri.007G123800 [exp] 53 / 4e-07 AT2G43210 330 / 6e-108 Ubiquitin-like superfamily protein (.1.2) Potri.001G085600 [exp] 51 / 2e-06 AT4G10790 520 / 0.0 UBX domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029591 [exp] 513 / 4e-177 AT4G11740 449 / 9e-153 Ubiquitin-like superfamily protein (.1) Lus10006321 [exp] 486 / 2e-166 AT4G11740 433 / 7e-146 Ubiquitin-like superfamily protein (.1) Lus10041365 [exp] 132 / 9e-33 AT4G11740 241 / 4e-74 Ubiquitin-like superfamily protein (.1) Lus10036564 [exp] 125 / 1e-30 AT4G00752 250 / 8e-78 UBX domain-containing protein (.1) Lus10027684 [exp] 60 / 2e-09 AT4G10790 219 / 3e-67 UBX domain-containing protein (.1) Lus10026718 [exp] 50 / 3e-06 AT2G43210 341 / 8e-112 Ubiquitin-like superfamily protein (.1.2) Lus10026717 [exp] 50 / 3e-06 AT2G43210 338 / 8e-111 Ubiquitin-like superfamily protein (.1.2) Lus10017317 [exp] 49 / 8e-06 AT4G10790 382 / 4e-130 UBX domain-containing protein (.1) Lus10025504 [exp] 49 / 1e-05 AT2G43210 355 / 1e-117 Ubiquitin-like superfamily protein (.1.2) Lus10003214 [exp] 46 / 6e-05 AT4G10790 525 / 0.0 UBX domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00789 [poplar] [flax] UBX UBX domain CL0214 [poplar] [flax] UBA PF14555 [poplar] [flax] UBA_4 UBA-like domain
Representative CDS sequence Show only first row Show all	>Potri.003G122300.7 pacid=42786648 polypeptide=Potri.003G122300.7.p locus=Potri.003G122300 ID=Potri.003G122300.7.v4.1 annot-version=v4.1 ATGGCCAGACCTAATCAAGAAGCAATCGAGACGTTTATCAGCATCACAGGCGTCGCCGAAGATGTAGCGGTGCAAAAACTTGAGGAACATGGTGGTGATC TCAATGCAGCTGTCAACACGCATTTCAGCGAAGGAGACAGAAGCGCCATGCGACAACCTTCCATTCCTTCGCTGCAAGATGATGTCATGGATATTGATGA TGACCCAATTGAAGTTGCGCCACCTCCTAGGAGAAATCCTCTATCAATTCCAGCTGAGAGTGGTGCTATGAATTCGTTCTCACTTCTTGAACCACTTTTT CAAAGAGGTCTATTTGATACTGGTTCTGATTTTATGAACCAGGCACCCTTTGTTTCTCAACCAAGAGAGTTAAGGGAGATACCTATAGAGGTCAAGGATG ATAGTGATGCATCTGGTCATTCTGTTCATGCTCCTATTATTGAAGATGTAACTGGAACTGAACATGCACAAGGTCCTGGTATTCAGGGAACAGTCATAGC TGAGGATGACGATGATGATATTTTAACTGACATAAATGCACGGGCCACCCAACGGGATAGTTCTCTTGATGGACATTTCAGGCCCAGTGCTCCTGAATTT GATAACTTACCTGATTATAGCAATGACATAGAAGAAGAAATGGTCCGGGCTGCCATTGAGGCTTCAAAGCAAGAGGCTCAGGAGCTAACTGAAACTGGAC CTCAGCAAAGGCAGTCTCATGGGGAGGATGCTGAACTTGAACATGTGGATTCATTATCCTTAAAGACAGCAGAGCAAGAGAAAACTTTGCATGGCCAGAG GGGGAAAGTTGGACCATCAGAAGTAGGAGATAATGCTGTTGAGGAAGGGCAGGGGAAAATAGCTGCATCAAATGGAGGGCAGGAGGCAGGAAGCTCTTCC ATCCAAGATGAAGCGGAAGATGTGGAAGATCAGCCTCTCATTAGGCACAGATCAAGACAGCCATCTTCCGGCTCTTTGGAATCTGCTAGAGAAGTTGGAG TTGCTGAGGCTAGCCCGCCATCAAGTCCTGGACAGAGTAATATAGGAAGTCATCCCCTGCACAATGGAGATGCATTTTCTGATGAGTGGGGAGGCATCTC TTCTGAGGAGCATGATGAAGCAGTCATGCTTGAGGCTGCAATGTTTGGTGGAATTCCTGAAGGGACTGGATATCGCTTTCCATATACACCTCACCACCAG TTCATGCAAAATGAGAATCATTATCCTCGTCCAGTACCTCGTCCTCCATCACCCTCTTTACAAGCTCAGCGCCTGATCCGTGAACAACAGGACGATGAGT ATCTTGCATCATTGGCAGCTGACCGAGAAAAGGAGATGAAGGCCATTGAGGAAGCTGAAGCTCGCCGTGTACAAGAAGAAGTGGCTAGGAAAGCTGCTCT TGAAGAAGAAAGGCGAAAAGAGGAAGAATCTCGTAGAAAATTGGAGGAAGAGCAGGAGTTTGAGAGACTGTTGGCAGCTAAAGAAGCTTCTCTGGCTCTT GAACCTTCATCTAATGATGAGAATGCTGTGACGCTTTTGGTGCGGATGCCTGATGGAAGCCGGCGTGGCCGCCGATTTCTCAAGTCTGACAAGTTACATG CTCTCTTTGATTTCATAGATATTGGCAGAGTGGTCAAGCCAGGCACTTACAGATTGGTTAGGCCATACCCAAGGCGTGCTTTCAGTGATGGAGAGGGTGC GTTGACTCTCAACGAACTTGGCCTGACCAGCAAACAGGAAGCCTTGTTTCTAGAGTTGATCTAA
AA sequence Show only first row Show all	>Potri.003G122300.7 pacid=42786648 polypeptide=Potri.003G122300.7.p locus=Potri.003G122300 ID=Potri.003G122300.7.v4.1 annot-version=v4.1 MARPNQEAIETFISITGVAEDVAVQKLEEHGGDLNAAVNTHFSEGDRSAMRQPSIPSLQDDVMDIDDDPIEVAPPPRRNPLSIPAESGAMNSFSLLEPLF QRGLFDTGSDFMNQAPFVSQPRELREIPIEVKDDSDASGHSVHAPIIEDVTGTEHAQGPGIQGTVIAEDDDDDILTDINARATQRDSSLDGHFRPSAPEF DNLPDYSNDIEEEMVRAAIEASKQEAQELTETGPQQRQSHGEDAELEHVDSLSLKTAEQEKTLHGQRGKVGPSEVGDNAVEEGQGKIAASNGGQEAGSSS IQDEAEDVEDQPLIRHRSRQPSSGSLESAREVGVAEASPPSSPGQSNIGSHPLHNGDAFSDEWGGISSEEHDEAVMLEAAMFGGIPEGTGYRFPYTPHHQ FMQNENHYPRPVPRPPSPSLQAQRLIREQQDDEYLASLAADREKEMKAIEEAEARRVQEEVARKAALEEERRKEEESRRKLEEEQEFERLLAAKEASLAL EPSSNDENAVTLLVRMPDGSRRGRRFLKSDKLHALFDFIDIGRVVKPGTYRLVRPYPRRAFSDGEGALTLNELGLTSKQEALFLELI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G11740		SAY1	Ubiquitin-like superfamily pro...		Potri.003G122300 [exp]	0	1
AT3G11397		PRA1.A3	prenylated RAB acceptor 1.A3 (...		Potri.008G060400 [exp]	3.31	0.7542
AT1G27760		SAT32, ATSAT32	SALT-TOLERANCE 32, interferon-...		Potri.014G016800 [exp]	3.74	0.7906
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Potri.001G370300 [exp]	4.12	0.7932
AT1G78420			RING/U-box superfamily protein...		Potri.001G378000 [exp]	9.89	0.7703
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Potri.008G161400 [exp]	10.24	0.7156
AT3G61140		EMB78, CSN1, CO...	EMBRYO DEFECTIVE 78, COP9 SIGN...		Potri.002G154500 [exp]	11.48	0.7287	EMB78.2
AT2G39760		ATBPM3	BTB/POZ/MATH-domains containin...		Potri.008G059600 [exp]	11.61	0.7803
AT4G13630			Protein of unknown function, D...		Potri.002G242900 [exp]	13.22	0.7762
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.003G115500 [exp]	16.00	0.7459
AT3G53970			proteasome inhibitor-related (...		Potri.016G103800 [exp]	16.49	0.7166

Compare expression of checked genes

Potri.003G122300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.