Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CYP87.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12740 772 / 0 CYP87A2 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) AT1G78490 400 / 5e-136 CYP708A3 "cytochrome P450, family 708, subfamily A, polypeptide 3", cytochrome P450, family 708, subfamily A, polypeptide 3 (.1) AT5G48000 394 / 3e-133 THAH1, THAH, CYP708A2 THALIANOL HYDROXYLASE 1, THALIANOL HYDROXYLASE, "cytochrome P450, family 708, subfamily A, polypeptide 2", cytochrome P450, family 708, subfamily A, polypeptide 2 (.1.2.3.4.5) AT1G55940 392 / 3e-130 CYP708A1 "cytochrome P450, family 708, subfamily A, polypeptide 1", cytochrome P450, family 708, subfamily A, polypeptide 1 (.1) AT3G44970 367 / 8e-123 Cytochrome P450 superfamily protein (.1) AT4G15396 329 / 5e-108 CYP702A6 "cytochrome P450, family 702, subfamily A, polypeptide 6", cytochrome P450, family 702, subfamily A, polypeptide 6 (.1) AT1G65670 325 / 3e-106 CYP702A1 "cytochrome P450, family 702, subfamily A, polypeptide 1", cytochrome P450, family 702, subfamily A, polypeptide 1 (.1) AT4G15393 319 / 3e-104 CYP702A5 "cytochrome P450, family 702, subfamily A, polypeptide 5", cytochrome P450, family 702, subfamily A, polypeptide 5 (.1.2.3) AT4G15310 317 / 1e-103 CYP702A3 "cytochrome P450, family 702, subfamily A, polypeptide 3", cytochrome P450, family 702, subfamily A, polypeptide 3 (.1) AT5G05690 317 / 1e-103 CBB3, DWF3, CYP90A1, CYP90A, CPD DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G109100 [exp] 903 / 0 AT1G12740 770 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.009G143600 [exp] 516 / 0 AT1G12740 475 / 3e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G183800 [exp] 513 / 5e-180 AT1G12740 476 / 1e-165 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.004G204100 [exp] 496 / 2e-173 AT1G12740 468 / 9e-163 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270404 [exp] 492 / 5e-172 AT1G12740 443 / 9e-153 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270500 [exp] 492 / 8e-172 AT1G12740 443 / 1e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270400 [exp] 491 / 9e-172 AT1G12740 442 / 2e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270800 [exp] 489 / 1e-170 AT1G12740 488 / 2e-170 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Potri.001G270600 [exp] 488 / 3e-170 AT1G12740 441 / 5e-152 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024495 [exp] 838 / 0 AT1G12740 751 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10017839 [exp] 706 / 0 AT1G12740 640 / 0.0 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10005762 [exp] 454 / 4e-156 AT1G12740 429 / 1e-146 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10042788 [exp] 405 / 1e-137 AT1G12740 397 / 1e-134 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10028628 [exp] 390 / 3e-132 AT1G12740 360 / 9e-121 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10027434 [exp] 375 / 1e-125 AT1G12740 342 / 3e-113 "cytochrome P450, family 87, subfamily A, polypeptide 2", cytochrome P450, family 87, subfamily A, polypeptide 2 (.1.2) Lus10040193 [exp] 306 / 3e-99 AT5G05690 687 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014850 [exp] 296 / 7e-95 AT5G05690 679 / 0.0 DWARF 3, CYTOCHROME P450 90A1, CONSTITUTIVE PHOTOMORPHOGENIC DWARF, CABBAGE 3, Cytochrome P450 superfamily protein (.1.2.3) Lus10014240 [exp] 293 / 2e-94 AT3G30180 531 / 0.0 brassinosteroid-6-oxidase 2 (.1) Lus10000647 [exp] 292 / 9e-94 AT3G30180 540 / 0.0 brassinosteroid-6-oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.003G122500.1 pacid=42784722 polypeptide=Potri.003G122500.1.p locus=Potri.003G122500 ID=Potri.003G122500.1.v4.1 annot-version=v4.1 ATGTGGGCTTTGTTTTTTGGAGCTTTGATTATTATAAGCATCACACATTGGGTTCACCGCTGGAGAAACCCCAGATGCAATGGCACTCTTCCACCAGGTT CAATGGGATTGCCACTTATTGGCGAGACCCTTCAATTCTTCGCTCCTAATACTTCTTTTGATATCCCTCCCTTTGTCAAAGAAAGGATGAAAAGATATGG ACCAATATTCCGGACTAATTTGGTTGGAAGGCCAGTTGTAGTATCAACGGACCCGGATCTCAATTACTTTATCTTCCAACAAGAGGGACAATTGTTCCAG AGCTGGTATCCAGATACATTCACAGAGATTTTTGGAAGGCAAAATGTCGGCTCATTACATGGGTTCATGTACAAGTATCTTAAGAATATGGTGCTTAATC TCTTTGGTCCAGAAAGCCTTAAGAAAATGCTCCCTGAAGTTGAACAGACAACATCCAAGAGATTACAACTATGGTCCCATCAAGAGTCAGTCGAATTAAA AGAAACAACTGCAACTATGATATTCGATCTGACAGCAAAGAAGCTCATAAGTTATGATCAAGATAATTCTTCGGAGAATCTAAGGGACAACTTTGTTGCA TTCATACACGGATTGATCTCCTTCCCTTTGGACATTCCAGGAACAGCATATCACGAATGCTTACGGGGTAGGAAAAAGGCAATGAGAATGCTAAAAAACC AGCTACAGGAAAGACGAGCAAATCCGAGAAAGTACCGAAGTGATTTTTTCGATTATGTGCTTGAAGAACTTCAGGAGGACAGAGGAATCCTTACAGAGGA AATTGCTCTGGATTTAATGTTTGTGCTGCTATTTGCTAGCTTTGAAACAACTTCCCTGGCTCTAACTTTAGCCGTCAAATTTCTCTCGGATAATCCGTTG GTGCTAAAGAAACTAACGGAAGAGCACGAGGGAATTCTGAGAAATCGGGTAGATAGCAACTCTGGTCTTACATGGAACGAATACAAATCAATGAAATTCA CATTTCAGGTAATTAATGAAACAGTTAGACTGGCAAACATAGTTCCAGGGATTTTCAGAAAAGCACTTAGAGACATCCAGTTTAAGGGATATACCATTCC AGAAGGTTGGGCAGTAATGGTTTGTCCCCCTGCAGTACACTTAAGCCCAGAAAAATATGAAGATCCACTTGCCTTCAATCCATGGAGATGGGAGGGATTG GAATTAAACGGTGCATCAAAAAAATTCATGGCTTTTGGTGGCGGCATGAGATTTTGTGTTGGAACAGAGTTTACCAAGGTGCAGATGGCTGTATTTCTAC ATTGCCTGGTCACAAAGTTCAGATGGCAAGTAATCAAAGGAGGAAATATTGTTCGAACTCCTGGTTTACAATTTCCAAGTGGTTATCACATTCAGCTCAT GGAGAGAGACAAAAAAATACAACTCACGCAATCATATGCCCAGTAA
AA sequence Show only first row Show all	>Potri.003G122500.1 pacid=42784722 polypeptide=Potri.003G122500.1.p locus=Potri.003G122500 ID=Potri.003G122500.1.v4.1 annot-version=v4.1 MWALFFGALIIISITHWVHRWRNPRCNGTLPPGSMGLPLIGETLQFFAPNTSFDIPPFVKERMKRYGPIFRTNLVGRPVVVSTDPDLNYFIFQQEGQLFQ SWYPDTFTEIFGRQNVGSLHGFMYKYLKNMVLNLFGPESLKKMLPEVEQTTSKRLQLWSHQESVELKETTATMIFDLTAKKLISYDQDNSSENLRDNFVA FIHGLISFPLDIPGTAYHECLRGRKKAMRMLKNQLQERRANPRKYRSDFFDYVLEELQEDRGILTEEIALDLMFVLLFASFETTSLALTLAVKFLSDNPL VLKKLTEEHEGILRNRVDSNSGLTWNEYKSMKFTFQVINETVRLANIVPGIFRKALRDIQFKGYTIPEGWAVMVCPPAVHLSPEKYEDPLAFNPWRWEGL ELNGASKKFMAFGGGMRFCVGTEFTKVQMAVFLHCLVTKFRWQVIKGGNIVRTPGLQFPSGYHIQLMERDKKIQLTQSYAQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Potri.003G122500 [exp]	0	1	CYP87.2
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	1.41	0.9879
AT5G05340			Peroxidase superfamily protein...		Potri.016G132800 [exp]	1.73	0.9871	Pt-PRX1.7
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Potri.012G042800 [exp]	2.82	0.9876
AT5G37990			S-adenosyl-L-methionine-depend...		Potri.017G121800 [exp]	2.82	0.9859
AT4G00750			S-adenosyl-L-methionine-depend...		Potri.012G137300 [exp]	4.89	0.9798
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G138401 [exp]	5.29	0.9779
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.004G033000 [exp]	5.47	0.9830
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.001G447300 [exp]	6.00	0.9766
AT1G68940			Armadillo/beta-catenin-like re...		Potri.010G136500 [exp]	8.48	0.9766
AT4G30170			Peroxidase family protein (.1)		Potri.018G089900 [exp]	8.48	0.9741

Compare expression of checked genes

Potri.003G122500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.