Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23050 606 / 0 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06640 427 / 1e-139 PAS domain-containing protein tyrosine kinase family protein (.1) AT5G49470 384 / 3e-126 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) AT1G67890 374 / 6e-119 PAS domain-containing protein tyrosine kinase family protein (.1.2) AT3G06620 369 / 5e-117 PAS domain-containing protein tyrosine kinase family protein (.1) AT3G06630 348 / 3e-110 protein kinase family protein (.1) AT5G11850 344 / 3e-106 Protein kinase superfamily protein (.1) AT1G73660 344 / 3e-105 protein tyrosine kinase family protein (.1) AT1G18160 342 / 2e-104 Protein kinase superfamily protein (.1) AT1G08720 332 / 2e-101 EDR1, ATEDR1 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G146000 [exp] 394 / 4e-126 AT3G06620 953 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Potri.008G105100 [exp] 393 / 4e-126 AT5G49470 948 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2.3.4) Potri.015G040100 [exp] 345 / 4e-105 AT1G73660 593 / 0.0 protein tyrosine kinase family protein (.1) Potri.018G053800 [exp] 338 / 1e-103 AT5G11850 517 / 2e-169 Protein kinase superfamily protein (.1) Potri.006G229400 [exp] 338 / 3e-103 AT5G11850 520 / 2e-170 Protein kinase superfamily protein (.1) Potri.005G047600 [exp] 335 / 4e-102 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.013G034800 [exp] 334 / 7e-102 AT1G08720 972 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Potri.012G048400 [exp] 335 / 1e-101 AT1G73660 1065 / 0.0 protein tyrosine kinase family protein (.1) Potri.016G095750 [exp] 322 / 2e-98 AT5G03730 970 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016912 [exp] 392 / 3e-126 AT1G67890 848 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1.2) Lus10037772 [exp] 392 / 2e-125 AT3G06620 919 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10040540 [exp] 378 / 2e-120 AT3G06620 858 / 0.0 PAS domain-containing protein tyrosine kinase family protein (.1) Lus10027247 [exp] 344 / 2e-105 AT1G18160 987 / 0.0 Protein kinase superfamily protein (.1) Lus10000937 [exp] 336 / 9e-104 AT1G08720 917 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10031341 [exp] 336 / 1e-103 AT1G73660 682 / 0.0 protein tyrosine kinase family protein (.1) Lus10004124 [exp] 337 / 2e-103 AT1G08720 948 / 0.0 ENHANCED DISEASE RESISTANCE 1, Protein kinase superfamily protein (.1) Lus10038955 [exp] 329 / 6e-100 AT1G18160 978 / 0.0 Protein kinase superfamily protein (.1) Lus10023865 [exp] 324 / 4e-99 AT5G03730 1041 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2) Lus10014368 [exp] 323 / 2e-98 AT5G03730 1030 / 0.0 SUGAR-INSENSITIVE 1, CONSTITUTIVE TRIPLE RESPONSE 1, Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.003G122700.3 pacid=42787379 polypeptide=Potri.003G122700.3.p locus=Potri.003G122700 ID=Potri.003G122700.3.v4.1 annot-version=v4.1 ATGCGAGTCTCCGGCGAGAAAAATGGCGGCGGAGATGACGAGTCTGGAACGAGTGTGTACCGAGTTCTGGTGGATCGGTGCGCGAGTCTTGAAGCGAGTC ATGCAAAGCTGAAACAGCAACTGAGTGAACTTACGGAGGCTGATGAGAAAAGAAAAAAGAATAATAGCGAGGCTATGGCGATGTCAGATGCCCAGTGGGG GTGTATTCCTGGGTACTTCACTACTGGGAGTCCTTACAAGAGCGTTCTGGATTGCATTGGACATGCTGTTCATGTGTGTAGGGCTTCCTCAGGTGAAATT GTATACTGGAATCGTTCTGCTGAAAATCTATATGGATGGAAAGACAGTGAAGTCATTGGACAAAGTGCTACTGAACTCCTTGTCGCCGAAGACCATTATG CACATCTAAAGAAGATAATGGAAAGACTGAGCTTTGGACAATCATGGTCTGGTCGGTTCCCATTTAAGAAAAGATCAGGTGACTTGTTTATGGCTTTGGT TACAAAAAGCCCATTGTATGAGGAAGGTGAGCTTGCTGGCATTGTTACTGTTTCAAGTGACGCAGCAATATTTAACACCGAAAACTCACAAAATCGTGCT AGATTACGGAGGCTAAACTTGAAAAAGATTCAATGGAACCCAAGACCACCAATTGCGCCGGTGACGCAGATTGCATCGTCAGTTTCCAATCTGGCCCCAA ATTTTTTGGCTCGAAAACATGGTGATGACACATGCAATGAACATGGAAATTCTTGGGACAAAGGAGATACTGCAACAGATATGCGGTGCTTTAGATCGGA GATCCCTGGTGAACCAGCTGCTAAGATACTGTTAGCAAAGCTGAATATCAAGGGCATTGGCAACATTGGAAAACATGACGATGCCAGTGCTCAACAAAAT GGTCCTCGTAATGTTGCAGAAAGAAATGAAGCACCAAATGGAACTAACGATCTTGCAAGTTCAAAGGCATCGTCTTCTTATCACTGCAACAACGATGCTG AAAGAGAAATTTCACAGAAAATAAATTCCTCCTCGGAATTCCGAAGAGAATATTCAAATGCATATCCAATCAGAAGCCCTAATGATTCAGAAGAGAACTT TCCTGTAGCCTCATCAACAGAATGCAATGGACGTCATGGGTTAGATAAGCCAGGAGATCAGCTGCAAAAATTAGTCTGCCAACAGGACAGGAATGAATTG GAGCTAGAAGCATCAAACTTGGAATCCAATGGGGTAGAAGATGATGCAAAAAGACAGCCAGATGGTAATTTTCCAAGTAACGAGAAGAGTGTCGGCAGCC TTGGAGGTACATCAAGCAAAAGGGATCGCGATTCAAATTGCATAGTGGACTGTGAGATTCACTGGGAAGACCTACAACTGGGAGAGGAGATTGGTCGAGG TGCATATGCTGCTGTTCGTCGTGGAATTTGGAATGGATCGGATGTTGCCGTAAAGATTTATTTTGGGAATCAATACAAAGAAGAAACTTTACTAGACTAC CAGAAGGAGATCGATATAATGAAAAGACTCAGGCATCCAAATGTGTTGCTATTTATGGGAGCAGTATATTCACCAGAAAGACTTGCCATTGTCACGGAGT TTTTACCCAGGGGAAGTCTTTTCAAGACACTACACAAAAACAGCCCGGCCTTGGACATTAGACGGCGTCTAAAGATGGCCCTTGACGTTGCTAGAGGCAT GAATTATTTGCATCATAGAAATCCACCTATAGTGCATAGAGACTTGAAATCTTCCAATCTCCTCGTTGATAAAAACTGGACTGTCAAGGTTGGAGACTTT GGCCTGTCAAAGTGGATGAATGCAACCTTCTTAACTGCAAAATCTGGAAGAGGAACTCCTCAATGGATGGCCCCTGAAGTCCTCCGGAATGAACCTTCAA ATGAAAAATCTGATGTGTTCAGTTTCGGCGTCATCCTCTGGGAACTCATGGCTGTCTCCATTCCATGGGTCAAGTTAAATTCCTTACAGATAGTTGGGGT TGTAGGCTTCATGGATAGAAGATTGGAATTACCAGAAAGCCTTGATCCCAAGGTAGCATCTATTATCAACGACTGTTGGCGGAGTGATCCTGAACAACGT CCATCGTTTGAGGAGATAATACAAAGAATGGCAGGTGATCACATATCCTAG
AA sequence Show only first row Show all	>Potri.003G122700.3 pacid=42787379 polypeptide=Potri.003G122700.3.p locus=Potri.003G122700 ID=Potri.003G122700.3.v4.1 annot-version=v4.1 MRVSGEKNGGGDDESGTSVYRVLVDRCASLEASHAKLKQQLSELTEADEKRKKNNSEAMAMSDAQWGCIPGYFTTGSPYKSVLDCIGHAVHVCRASSGEI VYWNRSAENLYGWKDSEVIGQSATELLVAEDHYAHLKKIMERLSFGQSWSGRFPFKKRSGDLFMALVTKSPLYEEGELAGIVTVSSDAAIFNTENSQNRA RLRRLNLKKIQWNPRPPIAPVTQIASSVSNLAPNFLARKHGDDTCNEHGNSWDKGDTATDMRCFRSEIPGEPAAKILLAKLNIKGIGNIGKHDDASAQQN GPRNVAERNEAPNGTNDLASSKASSSYHCNNDAEREISQKINSSSEFRREYSNAYPIRSPNDSEENFPVASSTECNGRHGLDKPGDQLQKLVCQQDRNEL ELEASNLESNGVEDDAKRQPDGNFPSNEKSVGSLGGTSSKRDRDSNCIVDCEIHWEDLQLGEEIGRGAYAAVRRGIWNGSDVAVKIYFGNQYKEETLLDY QKEIDIMKRLRHPNVLLFMGAVYSPERLAIVTEFLPRGSLFKTLHKNSPALDIRRRLKMALDVARGMNYLHHRNPPIVHRDLKSSNLLVDKNWTVKVGDF GLSKWMNATFLTAKSGRGTPQWMAPEVLRNEPSNEKSDVFSFGVILWELMAVSIPWVKLNSLQIVGVVGFMDRRLELPESLDPKVASIINDCWRSDPEQR PSFEEIIQRMAGDHIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23050			PAS domain-containing protein ...		Potri.003G122700 [exp]	0	1
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.003G111900 [exp]	1.41	0.9365
AT5G23160			unknown protein		Potri.013G149300 [exp]	5.19	0.8823
AT1G76680		OPR1, ATOPR1	ARABIDOPSIS 12-OXOPHYTODIENOAT...		Potri.003G004600 [exp]	5.74	0.8545
AT1G75540	CO	LHUS, AtBBX21, ...	long hypocotyl under shade, B-...		Potri.002G028200 [exp]	6.78	0.8918	Pt-COL6.2
AT5G19875			unknown protein		Potri.001G009200 [exp]	14.66	0.8674
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128000 [exp]	15.29	0.8634
AT1G25530			Transmembrane amino acid trans...		Potri.008G118000 [exp]	17.66	0.8679
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.010G001000 [exp]	21.16	0.8257	Pt-ARR5.4
AT1G66920			Protein kinase superfamily pro...		Potri.015G018000 [exp]	23.23	0.8244
AT5G65140		TPPJ	trehalose-6-phosphate phosphat...		Potri.005G166700 [exp]	24.37	0.7318

Compare expression of checked genes

Potri.003G122700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.