Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23060 106 / 1e-24 IQD22 IQ-domain 22 (.1) AT5G62070 49 / 4e-06 IQD23 IQ-domain 23 (.1) AT5G07240 48 / 9e-06 IQD24 IQ-domain 24 (.1) AT4G14750 46 / 4e-05 IQD19 IQ-domain 19 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108800 [exp] 488 / 1e-170 AT4G23060 179 / 1e-50 IQ-domain 22 (.1) Potri.012G139800 [exp] 127 / 1e-31 AT5G07240 137 / 3e-36 IQ-domain 24 (.1) Potri.015G142200 [exp] 114 / 2e-27 AT5G07240 138 / 3e-36 IQ-domain 24 (.1) Potri.008G156700 [exp] 64 / 1e-10 AT4G14750 307 / 6e-101 IQ-domain 19 (.1) Potri.010G082600 [exp] 63 / 2e-10 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.003G047800 [exp] 49 / 7e-06 AT3G16490 299 / 1e-98 IQ-domain 26 (.1) Potri.001G190500 [exp] 47 / 2e-05 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.005G051500 [exp] 44 / 0.0003 AT4G14750 127 / 6e-33 IQ-domain 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017841 [exp] 254 / 4e-79 AT4G23060 258 / 2e-80 IQ-domain 22 (.1) Lus10024498 [exp] 201 / 4e-60 AT4G23060 195 / 4e-58 IQ-domain 22 (.1) Lus10005760 [exp] 64 / 1e-10 AT5G07240 219 / 3e-67 IQ-domain 24 (.1) Lus10027435 [exp] 59 / 3e-09 AT5G62070 207 / 3e-62 IQ-domain 23 (.1) Lus10006613 [exp] 57 / 1e-08 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10021904 [exp] 49 / 5e-06 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10041188 [exp] 49 / 6e-06 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10024499 [exp] 40 / 0.001 AT4G23060 48 / 4e-07 IQ-domain 22 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.003G122800.1 pacid=42787276 polypeptide=Potri.003G122800.1.p locus=Potri.003G122800 ID=Potri.003G122800.1.v4.1 annot-version=v4.1 ATGGGTAAAGCTTCCAAATGGTTCCGTGCCGTTCTCGGCCTCAAAAAACCCGACCCACCACCAGACCGCCCCGTTACAACTCGTTCTAAAGAAAAAAGGA GATGGAGTTTTGTCAAGTCCCACCGTGAAAAAGACCAACACCATCACCAACAGCAACAACAAGAGACGGAAGCCGTTAAAGCAGGCGTTTTGTACGGGCA GGAGTTTGAGGAGGACCCAAACAAGCATGCGATCGCTGTGGCTGCTGCTACTGCTGCAGTTGCGGAGGCTGCAGTTGCTGCCGCGCAGGCAGCTGCAGAG GTGGTGCGGTTAACAAGCAGTGGGAGGTGTGTTGATAACAGTGTTGCGTACGTTAGCGGGAGTCCTGGCTTACGTGAAGACTTCGCTGCTGTTAAGATCG AAGCTGCTTTTCGTGGCTACCTGGCAAGGAGAGCGTTAAGAGCATTAAAAGCGTTGGTGAGGCTTCAGGCACTGGTAAGAGGTCACCTTGAGAGGAAGCG AACAGCAGAGTGGCTTCATCGAATGCAAGCATTGCTGAGAGCGCAGGCTCGAGCACGTGCAGGACGTGCCCAAATTTCTGAATCCTCCCACTCAAGCAGC AAGTCTTCTCGCTATCACCTCCCTGGTCTGCCAACCCATGAAAAATCCGAGCATGCCATTCGTGCTACGAGTGGAAAATATGAACAATCATCAATGCTTA AGAGAACTGGGTCAAAAACTAAAGGCAGAGAAATTGCCGATCAAGATGTTGCACACTTATCCTTCAATTGGTCAGAACATGGAATGGATAGTAGAACATG GGATCATCAAGCCCCTTCGCCAGGAACTGGCCCCATTGATGATGACAAGATCCTTGAGATTGATTCTGGAAAACCACATATTACTCCTAAACGCAGAAAT CTCTTTCACCCTTCTCACCTTTCCTTGTCTGCGGATCAGTATAGCCATAGTTTCACAACATCAAAAGGCTCCACAGTCCGTCAAGCAGTTCCAAGCCCCT CATCTGGCGAAGTTCAATCTTTCAGTCCATTGAAATTCTCTCATGAGGTTGAGGAAGCATTTTGCACCGCTGATAATAGCCCGCAATTCTGCTCTGCATC ATCAAGGGGTGGCAGTGGTAAGAGAAGTCCCTTCACTCCCAGTAGGAGTGGTGGCTCTAGAAGCTTCATGAGTGGATACTCTGACTACCCAAATTATATG TGTAACACTGAATCTTCAAGGGCTAAGGTGAGATCTCTAAGCGCTCCAAAACAAAGACCCCAGTATGAGAGATCCAGCTCAACCAAGAGATACTCGGTTC TCGGCTTTGGTGAACAAAGATCGAGTAGTGCACAGAGTGCTTCTGCCTTGCGTGCAAGTTTTACAAGTAAAGCTTACCCTGGATCTGGTCGTTTGGACAG GCTGGGAATGCCTGTTGGGCAGAAATACTAA
AA sequence Show only first row Show all	>Potri.003G122800.1 pacid=42787276 polypeptide=Potri.003G122800.1.p locus=Potri.003G122800 ID=Potri.003G122800.1.v4.1 annot-version=v4.1 MGKASKWFRAVLGLKKPDPPPDRPVTTRSKEKRRWSFVKSHREKDQHHHQQQQQETEAVKAGVLYGQEFEEDPNKHAIAVAAATAAVAEAAVAAAQAAAE VVRLTSSGRCVDNSVAYVSGSPGLREDFAAVKIEAAFRGYLARRALRALKALVRLQALVRGHLERKRTAEWLHRMQALLRAQARARAGRAQISESSHSSS KSSRYHLPGLPTHEKSEHAIRATSGKYEQSSMLKRTGSKTKGREIADQDVAHLSFNWSEHGMDSRTWDHQAPSPGTGPIDDDKILEIDSGKPHITPKRRN LFHPSHLSLSADQYSHSFTTSKGSTVRQAVPSPSSGEVQSFSPLKFSHEVEEAFCTADNSPQFCSASSRGGSGKRSPFTPSRSGGSRSFMSGYSDYPNYM CNTESSRAKVRSLSAPKQRPQYERSSSTKRYSVLGFGEQRSSSAQSASALRASFTSKAYPGSGRLDRLGMPVGQKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23060		IQD22	IQ-domain 22 (.1)		Potri.003G122800 [exp]	0	1
AT3G11420			Protein of unknown function (D...		Potri.010G199900 [exp]	2.00	0.9660
AT2G18940			Tetratricopeptide repeat (TPR)...		Potri.006G166200 [exp]	2.44	0.9745
AT5G05690		CBB3, DWF3, CYP...	DWARF 3, CYTOCHROME P450 90A1,...		Potri.010G189800 [exp]	3.00	0.9700
AT1G79080			Pentatricopeptide repeat (PPR)...		Potri.001G457300 [exp]	3.16	0.9770
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Potri.005G164700 [exp]	8.36	0.9592	CRY1.1
AT5G20190			Tetratricopeptide repeat (TPR)...		Potri.006G068200 [exp]	8.36	0.9535
AT3G02690			nodulin MtN21 /EamA-like trans...		Potri.012G145300 [exp]	12.96	0.9579
AT1G73885			unknown protein		Potri.015G053800 [exp]	13.41	0.9656
AT4G02050		STP7	sugar transporter protein 7 (....		Potri.018G113300 [exp]	13.41	0.9443
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.001G005900 [exp]	16.61	0.9650

Compare expression of checked genes

Potri.003G122800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.