Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT1G63170 388 / 9e-134 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT4G11680 381 / 6e-131 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT3G61180 318 / 4e-106 RING/U-box superfamily protein (.1) AT1G68070 252 / 7e-81 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 241 / 2e-76 RIE1 RING-finger protein for embryogenesis (.1) AT4G32600 135 / 2e-35 RING/U-box superfamily protein (.1) AT1G80400 125 / 5e-32 RING/U-box superfamily protein (.1) AT4G26580 86 / 3e-18 RING/U-box superfamily protein (.1.2) AT5G55970 84 / 6e-18 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G155200 [exp] 313 / 3e-104 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.014G075000 [exp] 291 / 5e-96 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.008G134900 [exp] 271 / 4e-88 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.010G106300 [exp] 263 / 4e-85 AT1G68070 412 / 2e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.006G247000 [exp] 135 / 1e-35 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.018G034400 [exp] 134 / 5e-35 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.011G094800 [exp] 94 / 3e-21 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.001G371200 [exp] 88 / 5e-19 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.008G087200 [exp] 67 / 1e-12 AT1G26800 194 / 6e-63 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006313 [exp] 368 / 6e-126 AT4G11680 456 / 8e-161 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10041359 [exp] 305 / 4e-101 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 292 / 3e-96 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10034587 [exp] 263 / 8e-83 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10021801 [exp] 258 / 9e-83 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10029582 [exp] 240 / 2e-76 AT3G61180 315 / 3e-106 RING/U-box superfamily protein (.1) Lus10011475 [exp] 134 / 4e-35 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10013144 [exp] 132 / 1e-34 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10008106 [exp] 130 / 3e-34 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10023112 [exp] 117 / 6e-29 AT1G80400 447 / 1e-155 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.003G123300.2 pacid=42784806 polypeptide=Potri.003G123300.2.p locus=Potri.003G123300 ID=Potri.003G123300.2.v4.1 annot-version=v4.1 ATGTCCTCCACAACCACACCAATTTCCACCGCCACCACCACAACCCCGACGCGAACCGGATCATCCGATGACATAATCGACACGACGCCGTTTCTTTCCC CTGGTCAACAAAATGAACCCAATCCCAATTCAAGCCGCCGATCCATCCGCCGCCAATCCCTCCGTGACGCGGCCAGGTTTCTACGCCGTGCAAGTAGCCG CCGTATGATGAGGGAGCCATCGATGTTGGTTCGTGAGACGGCGGCGGAGCAGCTGGAGGAGAGGCAGAGTGATTGGGCGTATTCGAAGCCTGTGGTGATT TTGGATATCATTTGGAACTTTGCGTTCGTGGCCGTGGCGGCGGGGGTTTTGGTTTTGAGTAGGAAGGAGAATCCGGGTGTGCCTTTGAGGTTGTGGATTT TAGGATACGGGCTGCAATGCGTGTTGCATATGGTTTGTGTTTGTGTGGAGTACAGGAGGAGGAGAAGGAGGAGAGTTGGGTTTGGAGGAGGAGGAGGAGG AGGAGATGGTGGGATTGGGAGTGATGGGAATTCGAGTTCCGGTTCGAGAGGTGATTATGGAGAGTATGTCAGTTTGGCCCAGTTAGAAGATGATGGAACT AGCAGTGTTGCGAAGCATCTGGAATCTGCAAACACAATGTTTTCTTTTATCTGGTGGATCATTGGATTCTACTGGGTGTCTACTGGTGGCCAAGCTTTGG CACTAGGCTCTCCCCAGCTATACTGGTTATGTATAGTTTTTCTCGGTTTTGATGTGTTCTTCGTTGTTTTTTGTGTTGCCCTGGCATGTGTCATCGGGAT TGCTGTGTGCTGCTGTCTTCCATGTATCATTGCAATCTTATATGCTGTTACTGACCAGGAAGGAGCATCCAAAGAAGACATTGACCAACTCGCAAAATTC AAATTTCGAAGGGATGGTGATATTGACAAGCTCACTGGTGATGACCAAGGATGTTCTGGAGGAATAATGACTGAATGCGGCACAGATTCTCCTATGGAAC ATGTTCTTTCAGGAGAGGATGCGGAGTGTTGCATCTGCCTCTCTGCTTATGAAGATGGGGCTGAGCTAAGGCAACTTCCATGCGGTCACCATTTTCATTG TACCTGTGTAGATAAGTGGCTATATATTAATGCTACCTGTCCTCTCTGCAAGTACGATATCTTGAAGAGCACAAGCCAAGACAGGGAGGAAGTGTAG
AA sequence Show only first row Show all	>Potri.003G123300.2 pacid=42784806 polypeptide=Potri.003G123300.2.p locus=Potri.003G123300 ID=Potri.003G123300.2.v4.1 annot-version=v4.1 MSSTTTPISTATTTTPTRTGSSDDIIDTTPFLSPGQQNEPNPNSSRRSIRRQSLRDAARFLRRASSRRMMREPSMLVRETAAEQLEERQSDWAYSKPVVI LDIIWNFAFVAVAAGVLVLSRKENPGVPLRLWILGYGLQCVLHMVCVCVEYRRRRRRRVGFGGGGGGGDGGIGSDGNSSSGSRGDYGEYVSLAQLEDDGT SSVAKHLESANTMFSFIWWIIGFYWVSTGGQALALGSPQLYWLCIVFLGFDVFFVVFCVALACVIGIAVCCCLPCIIAILYAVTDQEGASKEDIDQLAKF KFRRDGDIDKLTGDDQGCSGGIMTECGTDSPMEHVLSGEDAECCICLSAYEDGAELRQLPCGHHFHCTCVDKWLYINATCPLCKYDILKSTSQDREEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12760			Zinc finger, C3HC4 type (RING ...		Potri.003G123300 [exp]	0	1
AT4G34610	HD	BLH6	BEL1-like homeodomain 6 (.1.2)		Potri.009G120800 [exp]	1.00	0.8521
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.005G126400 [exp]	2.44	0.7795
					Potri.007G125700 [exp]	5.29	0.7833
AT2G46690			SAUR-like auxin-responsive pro...		Potri.012G023400 [exp]	7.07	0.7347	SAUR22
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Potri.010G135200 [exp]	7.74	0.7607
AT2G37900			Major facilitator superfamily ...		Potri.006G092000 [exp]	9.38	0.7747
AT4G38580		HIPP26, ATFP6	HEAVY METAL ASSOCIATED ISOPREN...		Potri.009G135201 [exp]	13.11	0.6870
AT5G61230		PIA2, ANK6	phytochrome interacting ankyri...		Potri.001G129800 [exp]	13.22	0.7040
AT1G49000			unknown protein		Potri.012G059500 [exp]	14.42	0.7513
AT4G39140			RING/U-box superfamily protein...		Potri.009G120000 [exp]	17.94	0.7099

Compare expression of checked genes

Potri.003G123300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.