Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47670 140 / 1e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G53840 126 / 3e-33 ATPME1 pectin methylesterase 1 (.1) AT3G14300 126 / 4e-33 ATPMEPCRC, ATPME26 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) AT2G01610 90 / 1e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 88 / 4e-21 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G04960 78 / 3e-16 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G25250 74 / 4e-16 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G10710 74 / 4e-15 RHS12 root hair specific 12 (.1) AT1G23205 70 / 3e-14 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 69 / 3e-14 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G108200 [exp] 341 / 6e-120 AT3G47670 122 / 1e-33 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G072700 [exp] 172 / 5e-50 AT1G53840 723 / 0.0 pectin methylesterase 1 (.1) Potri.001G162700 [exp] 150 / 4e-42 AT1G53840 659 / 0.0 pectin methylesterase 1 (.1) Potri.006G134800 [exp] 95 / 3e-22 AT1G53840 505 / 1e-173 pectin methylesterase 1 (.1) Potri.008G132600 [exp] 87 / 1e-20 AT1G14890 216 / 1e-71 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G109300 [exp] 84 / 1e-19 AT1G14890 218 / 5e-72 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 78 / 1e-17 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 77 / 7e-17 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128200 [exp] 75 / 3e-16 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008625 [exp] 142 / 2e-41 AT3G47670 146 / 8e-43 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10037457 [exp] 137 / 6e-39 AT1G53840 234 / 1e-72 pectin methylesterase 1 (.1) Lus10042193 [exp] 135 / 5e-36 AT5G39850 327 / 2e-108 Ribosomal protein S4 (.1) Lus10003934 [exp] 133 / 1e-35 AT3G14300 663 / 0.0 A. THALIANA PECTIN METHYLESTERASE 26, pectinesterase family protein (.1) Lus10031138 [exp] 91 / 5e-22 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 86 / 2e-20 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10034859 [exp] 89 / 6e-20 AT3G10710 561 / 0.0 root hair specific 12 (.1) Lus10033399 [exp] 87 / 2e-19 AT3G10710 606 / 0.0 root hair specific 12 (.1) Lus10031132 [exp] 81 / 2e-18 AT1G62760 135 / 3e-40 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038915 [exp] 80 / 6e-18 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.003G123500.1 pacid=42784768 polypeptide=Potri.003G123500.1.p locus=Potri.003G123500 ID=Potri.003G123500.1.v4.1 annot-version=v4.1 ATGGAATCCCTTAACTTTTTCAAAGGCTATGGCAAAGTGAATCCGCTTGAAGATCAAAGCCCTCACCAACAGGAAAGTACTGCATCAAAACGCCGAATCC TCATCATCAGCGTTTCATCCATCCTCTTTTTTACTCTAATCCTCGGTCTAGCCCTTGCAGCATTGATCCATGAGTCAAATACCGAGCCAGACGAATTCCC ATATCTCTCTTCATCAAACTCAGCTGAGTCAATCAAAACAGTCTGTGACATGACTCTGTATCCATCCTCCTGCTTCACCAGCATATCCTCTCTTAACATT TCAACAAAACCTGACCCAGAAGTCATCTTCAAGCTCTCTCTCAAAGTCTCCATTACAGAGCTCAAATACCTCTCTTCTTTATTCACTAGTTCACATGATG TTAACTCTCAGGCTGCTATGAGAGATTGCGTGAGCCTGTTTGATGATTCCTTGGGTAAGCTCAACGATTCTTTGTTGGCAATGGAGGTTGGACCTGGAGA GAAGATGTTGACTTTGGAAAAAGTGAACGACATCCATACGTGGATCAGTGCTGCCATGACAGATCAAGATACTTGCATAGACGGTTTGGAGGAGATGGAA TCGGTGTTACCTGATGAGATCAAGGCCAAGGTGGAGAGGACTAAGGATTTCTTGAGCATTAGCTTGGCTATCATTGCTAAGATGGAAGCTCTTCTTAAAA AATTTGATCTCGAAATGCATTGA
AA sequence Show only first row Show all	>Potri.003G123500.1 pacid=42784768 polypeptide=Potri.003G123500.1.p locus=Potri.003G123500 ID=Potri.003G123500.1.v4.1 annot-version=v4.1 MESLNFFKGYGKVNPLEDQSPHQQESTASKRRILIISVSSILFFTLILGLALAALIHESNTEPDEFPYLSSSNSAESIKTVCDMTLYPSSCFTSISSLNI STKPDPEVIFKLSLKVSITELKYLSSLFTSSHDVNSQAAMRDCVSLFDDSLGKLNDSLLAMEVGPGEKMLTLEKVNDIHTWISAAMTDQDTCIDGLEEME SVLPDEIKAKVERTKDFLSISLAIIAKMEALLKKFDLEMH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47670			Plant invertase/pectin methyle...		Potri.003G123500 [exp]	0	1
AT5G07250		ATRBL3	RHOMBOID-like protein 3 (.1.2)		Potri.012G139600 [exp]	6.32	0.6222
AT5G52280			Myosin heavy chain-related pro...		Potri.012G141200 [exp]	14.14	0.6703
AT5G06680		ATSPC98, SPC98,...	ARABIDOPSIS THALIANA GAMMA TUB...		Potri.006G194200 [exp]	20.85	0.5529
AT1G59640	bHLH	ZCW32, bHLH031...	BIG PETAL UB, BIG PETAL P (.1....		Potri.008G190800 [exp]	24.26	0.5700
AT1G79720			Eukaryotic aspartyl protease f...		Potri.003G185175 [exp]	28.10	0.5856
AT1G55210			Disease resistance-responsive ...		Potri.003G216300 [exp]	28.30	0.5871
AT4G34880			Amidase family protein (.1)		Potri.009G130500 [exp]	40.69	0.5835
AT1G60590			Pectin lyase-like superfamily ...		Potri.010G042100 [exp]	44.27	0.5530
AT5G14980			alpha/beta-Hydrolases superfam...		Potri.001G466700 [exp]	45.00	0.5316
AT2G25790			Leucine-rich receptor-like pro...		Potri.006G237400 [exp]	64.80	0.5523

Compare expression of checked genes

Potri.003G123500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.