Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12770 710 / 0 ISE1, EMB1586 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G60990 179 / 4e-50 DEA(D/H)-box RNA helicase family protein (.1) AT2G40700 169 / 2e-45 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G55150 164 / 2e-44 DEA(D/H)-box RNA helicase family protein (.1) AT3G13920 160 / 2e-43 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT1G54270 159 / 3e-43 EIF4A-2 eif4a-2 (.1.2) AT3G19760 157 / 1e-42 EIF4A-III eukaryotic initiation factor 4A-III (.1) AT5G63120 160 / 3e-42 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G14610 160 / 5e-42 DEAD box RNA helicase family protein (.1.2) AT1G72730 155 / 6e-42 DEA(D/H)-box RNA helicase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G102501 [exp] 210 / 1e-65 AT1G12770 200 / 2e-62 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G013900 [exp] 189 / 8e-54 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 181 / 5e-51 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.005G093900 [exp] 168 / 1e-46 AT3G19760 693 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.005G000100 [exp] 169 / 1e-44 AT5G26742 924 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Potri.019G059100 [exp] 166 / 2e-44 AT2G40700 814 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.007G068800 [exp] 163 / 4e-44 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G070000 [exp] 161 / 6e-44 AT3G19760 689 / 0.0 eukaryotic initiation factor 4A-III (.1) Potri.005G000500 [exp] 165 / 2e-43 AT5G26742 885 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010686 [exp] 677 / 0 AT1G12770 647 / 0.0 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10038140 [exp] 442 / 2e-152 AT1G12770 390 / 2e-132 INCREASED SIZE EXCLUSION LIMIT 1, embryo defective 1586, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031761 [exp] 171 / 3e-47 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10031182 [exp] 171 / 4e-47 AT5G60990 674 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10030523 [exp] 172 / 3e-46 AT2G40700 799 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10001057 [exp] 172 / 1e-45 AT5G26742 919 / 0.0 embryo defective 1138, DEAD box RNA helicase (RH3) (.1), DEAD box RNA helicase (RH3) (.2), DEAD box RNA helicase (RH3) (.3) Lus10012874 [exp] 170 / 1e-45 AT2G40700 793 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023252 [exp] 164 / 8e-44 AT5G51280 1015 / 0.0 DEAD-box protein abstrakt, putative (.1) Lus10015187 [exp] 166 / 1e-43 AT2G33730 1083 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015627 [exp] 159 / 3e-42 AT1G55150 845 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.003G123600.1 pacid=42785681 polypeptide=Potri.003G123600.1.p locus=Potri.003G123600 ID=Potri.003G123600.1.v4.1 annot-version=v4.1 ATGCCATCATTAGTATCACCGCGGTTGCTCTTTCTTGTTGGAGAGACAATACACTTGAAGAAACTATCACGTGGTTCTAGCTCAGCTTTGTGTCAACGCA GTGTGCGGTTTTTTAGTCGTGTTGACCGGGACAAAAATGCACCTCTAACTCTTGCAAATCTTGGGTTTAATACCGAGTTTGAGACAACTACCAAAAATAA AAGAAATAAACTGGAGAATGTGAAAGTGAATTACCCGATTGAAGCACCGAAAAGTAGAGAGAAGGTGGCTACAAGCAACAAGAGTAGAGTTGTTAGAGTG AAAAAAACACTCGAAATAGAGTCCGCCCCATTTGCTGCAAAGTCATTTTCTGAGCTTGGCCTTCCACCTCCGTTGATAGAAAGATTAGAGAGGGAAGGGT TTAATGTTCCAACTGATGTTCAGTCTGCAGCAATCCCGACTATTCTCAAGAATCATGATGCTGTCATTCAGTCGTATACTGGGTCTGGAAAAACGCTTGC ATATGTACTTCCCATACTGTCTGAAGTTGGGCCGCTGAAGAATAATTATTCTAGTGCTGATAAAGAAACTGGGAAGAAAACAGAGATAGAAGCAGTTGTT GTGGCTCCGTCTAGAGAGCTAGCTATGCAAATAGTGAGAGAGGTTGAGAAACTGTTAGGACCTGAAAACAAGAGAGTGGTTCAACAACTTGTAGGAGGTG CAAACCGGTCAAGACAGGAAGAAGCTTTAAAGAAAAACAAGCCATTAATTGTTGTGGGTACCCCTGGCAGGATTGCAGAAATTAGTGCAGCTGGTAAACT TCATACCCATGGTTGTCGTTTTTTGGTCTTAGATGAAGTTGATGAGCTTCTTTCATTTAACTTCCGGCAGGACATCCACCGAATATTAGAACATGTAGGG AGGAGATCAGGGGCAGACCCTCAAGGACAAAAAAATTCACTTGTGAGATGGGCTGATCGTCGGACTATCATGGTATCTGCAACAGTGCCATTTTCTGTCG TAAGGGCTGCTAGGAGCTGGGCATGTGACCCACTTCTTGTCCAAGCAAAAAGTGTCATTCCACTTGAATCTCTCGCTCCTGGAACTGTTAACCTGTCCAG TCCTACTTCTAGTTCAAACTCAGACTCGAATTTGCAGCATCAGGCAACGGTGCAGAGCCTTCCTCCAGCATTGAAACACTATTATTGCGTCACAAGGTTG CAGCATAAGGTTGATACTTTGAGAAGATGTGTTCATGCACTAAATGCACAGTCTGTGATAGCCTTTATGAACCATACAAGGCAACTAAAAGATGCTGTCT TCAAACTAGAGGCTCGTGGGATGAAAGCTGCAGAGCTCCATGGGGATCTTGGCAAGCTTGGTAGGTCAACAATTCTAAAGAAATTTAAAAGTGGAGAGGT GAGAGTTCTCGTAACGAATGAACTTGCAGCAAGAGGCTTGGATGTTCCGGAATGTGATCTTGTTGTCAACCTTGACTTGCCTACGGACTCGATTCATTAT GCACATCGAGCTGGAAGGACTGGCCGGCTTGGGAGGAAGGGCACTGTGGTGACAATTTGCGAGGAGCGAGAAGTGTTTGTTGTGAAGAAACTGCAGAAGC AGCTTGGGGTCCCTATTCCTGCTTGCGATTTTACAGAGGGCAAGCTTATTGTTACTGACAAAGAGGAGAAACATGCGGAGGCTTTAAGGTGA
AA sequence Show only first row Show all	>Potri.003G123600.1 pacid=42785681 polypeptide=Potri.003G123600.1.p locus=Potri.003G123600 ID=Potri.003G123600.1.v4.1 annot-version=v4.1 MPSLVSPRLLFLVGETIHLKKLSRGSSSALCQRSVRFFSRVDRDKNAPLTLANLGFNTEFETTTKNKRNKLENVKVNYPIEAPKSREKVATSNKSRVVRV KKTLEIESAPFAAKSFSELGLPPPLIERLEREGFNVPTDVQSAAIPTILKNHDAVIQSYTGSGKTLAYVLPILSEVGPLKNNYSSADKETGKKTEIEAVV VAPSRELAMQIVREVEKLLGPENKRVVQQLVGGANRSRQEEALKKNKPLIVVGTPGRIAEISAAGKLHTHGCRFLVLDEVDELLSFNFRQDIHRILEHVG RRSGADPQGQKNSLVRWADRRTIMVSATVPFSVVRAARSWACDPLLVQAKSVIPLESLAPGTVNLSSPTSSSNSDSNLQHQATVQSLPPALKHYYCVTRL QHKVDTLRRCVHALNAQSVIAFMNHTRQLKDAVFKLEARGMKAAELHGDLGKLGRSTILKKFKSGEVRVLVTNELAARGLDVPECDLVVNLDLPTDSIHY AHRAGRTGRLGRKGTVVTICEEREVFVVKKLQKQLGVPIPACDFTEGKLIVTDKEEKHAEALR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12770		ISE1, EMB1586	INCREASED SIZE EXCLUSION LIMIT...		Potri.003G123600 [exp]	0	1
AT2G29760		OTP81	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.005G012600 [exp]	4.24	0.9669
AT3G62030		CYP20-3, ROC4	cyclophilin 20-3, rotamase CYP...		Potri.002G185200 [exp]	4.47	0.9663	ROC4.1
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.006G123600 [exp]	5.00	0.9732
AT1G55110	C2H2ZnF	ARABIDOPSISTHAL...	indeterminate(ID)-domain 7 (.1...		Potri.003G036900 [exp]	6.00	0.9634
AT2G25080		ATGPX1	glutathione peroxidase 1 (.1)		Potri.006G265400 [exp]	8.24	0.9665
AT2G34860		EDA3	embryo sac development arrest ...		Potri.001G009800 [exp]	10.19	0.9673
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.017G052300 [exp]	10.67	0.9520
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.001G049300 [exp]	14.38	0.9554
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.006G211500 [exp]	16.73	0.9649	Pt-FFC.2
AT5G61040			unknown protein		Potri.008G096100 [exp]	18.33	0.9561

Compare expression of checked genes

Potri.003G123600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.