Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12780 640 / 0 ATUGE1, UGE1 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) AT1G63180 624 / 0 UGE3 UDP-D-glucose/UDP-D-galactose 4-epimerase 3 (.1) AT4G10960 495 / 3e-177 UGE5 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) AT1G64440 483 / 2e-172 REB1, RHD1, UGE4 UDP-GLUCOSE 4-EPIMERASE, ROOT HAIR DEFECTIVE 1, ROOT EPIDERMAL BULGER1, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23920 476 / 1e-169 ATUGE2, UGE2 UDP-GLC 4-EPIMERASE 2, UDP-D-glucose/UDP-D-galactose 4-epimerase 2 (.1) AT5G44480 258 / 7e-83 DUR DEFECTIVE UGE IN ROOT, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G20460 255 / 5e-82 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G30620 244 / 1e-77 MURUS4, HSR8, UXE1, MUR4 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT2G34850 157 / 4e-46 MEE25 maternal effect embryo arrest 25, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G00110 105 / 4e-25 GAE3 UDP-D-glucuronate 4-epimerase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G090700 [exp] 496 / 2e-177 AT4G10960 607 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.003G140900 [exp] 490 / 4e-175 AT4G10960 606 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Potri.001G459700 [exp] 248 / 3e-79 AT1G30620 730 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.011G156100 [exp] 246 / 2e-78 AT1G30620 712 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G022000 [exp] 239 / 3e-76 AT1G30620 676 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.016G020000 [exp] 235 / 1e-74 AT1G30620 670 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.017G059100 [exp] 106 / 2e-25 AT3G23820 724 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.001G320000 [exp] 105 / 6e-25 AT3G23820 714 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1) Potri.003G114600 [exp] 103 / 1e-24 AT4G12250 587 / 0.0 UDP-D-glucuronate 4-epimerase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002246 [exp] 594 / 0 AT1G12780 592 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10029572 [exp] 588 / 0 AT1G12780 585 / 0.0 A. THALIANA UDP-GLC 4-EPIMERASE 1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 (.1) Lus10003875 [exp] 493 / 3e-176 AT4G10960 616 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10001822 [exp] 491 / 1e-175 AT4G10960 615 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10023074 [exp] 476 / 6e-169 AT4G10960 585 / 0.0 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10032394 [exp] 416 / 6e-147 AT4G10960 494 / 8e-178 UDP-D-glucose/UDP-D-galactose 4-epimerase 5 (.1) Lus10038423 [exp] 249 / 5e-80 AT1G30620 682 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10003496 [exp] 218 / 1e-67 AT1G30620 656 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10013107 [exp] 217 / 2e-67 AT1G30620 652 / 0.0 UDP-D-XYLOSE 4-EPIMERASE 1, MURUS 4, HIGH SUGAR RESPONSE8, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10016640 [exp] 107 / 1e-25 AT3G23820 746 / 0.0 UDP-D-glucuronate 4-epimerase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02719 [poplar] [flax] Polysacc_synt_2 Polysaccharide biosynthesis protein
Representative CDS sequence Show only first row Show all	>Potri.003G123700.3 pacid=42784484 polypeptide=Potri.003G123700.3.p locus=Potri.003G123700 ID=Potri.003G123700.3.v4.1 annot-version=v4.1 ATGGCTGGACAAACAATTCTTGTGACTGGTGGGGCTGGGTTTATTGGCACTCACACAGTAGTACAGCTCCTAAAGGAAGGTTTTAAGGTTTCAATCATTG ACAATCTTGATAATTCTGTCACTGAAGCTGTTGATCGTGTTAAGGAAGTGGTGGGTCCTCAGCTTTCTAAGAATCTTGAATTCAATCTGGGTGATCTTAG AAACAAGGATGATTTGGAGAAGTTGTTTTCAAGAACTAAGTTCGATGCTGTGATCCATTTTGCTGGTCTCAAGGCAGTTGGGGAGAGTGTTGCTAATCCA CGTAGATATTTTGACAATAATCTGGTTGGCACCATCAATCTCTATGAAGTTATGGCAAAATACAATTGCAAGAAGATGGTTTTCTCATCATCAGCAACTG TTTATGGCCAACCTGAAAAAATTCCTTGTGTTGAGGACTTCAACCTAATGGCAATGAATCCTTATGGACGTACCAAGCTTTTCCTTGAAGAAATTGCTCG AGATATTCAAAAGGCAGAACCAGAATGGAGTATCATTTTACTTAGGTACTTCAACCCCGTGGGAGCTCATGAGAGTGGTAAACTTGGTGAAGATCCCAGG GGTATCCCAAACAATCTCATGCCCTACATACAACAAGTAGCTGTTGGTAGACTTCCTGAGCTTAATGTATATGGTCATGACTATCCCACAAAGGATGGTA GTGCGGTCAGGGACTATATCCATGTTATGGACTTGGCAGATGGTCATGTTGCTGCTCTTCGGAAAATTTCCACATCAAAGGATATTGGTTGTATCGCATA CAACCTGGGGACTGGATGTGGAACATCTGTGCTTGAAATGGTCACTGCATTTGAAAAAGCTTCTGGCAAGAAAATCCACGTCAAGTTGTGTCCACGAAGG CCTGGAGATGCCACAGCGGTATATGCTTCTACAGAGAAAGCTGAGAGAGAACTTGGCTGGAAGGCAAAATACGGTGTCGAGGAGATGTGCAGGGACCAAT GGAAATGGGCAAGCAATAATCCATGGGGTTACCAGTCAAAGCCTGAAAAATAA
AA sequence Show only first row Show all	>Potri.003G123700.3 pacid=42784484 polypeptide=Potri.003G123700.3.p locus=Potri.003G123700 ID=Potri.003G123700.3.v4.1 annot-version=v4.1 MAGQTILVTGGAGFIGTHTVVQLLKEGFKVSIIDNLDNSVTEAVDRVKEVVGPQLSKNLEFNLGDLRNKDDLEKLFSRTKFDAVIHFAGLKAVGESVANP RRYFDNNLVGTINLYEVMAKYNCKKMVFSSSATVYGQPEKIPCVEDFNLMAMNPYGRTKLFLEEIARDIQKAEPEWSIILLRYFNPVGAHESGKLGEDPR GIPNNLMPYIQQVAVGRLPELNVYGHDYPTKDGSAVRDYIHVMDLADGHVAALRKISTSKDIGCIAYNLGTGCGTSVLEMVTAFEKASGKKIHVKLCPRR PGDATAVYASTEKAERELGWKAKYGVEEMCRDQWKWASNNPWGYQSKPEK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12780		ATUGE1, UGE1	A. THALIANA UDP-GLC 4-EPIMERAS...		Potri.003G123700 [exp]	0	1
AT4G19010			AMP-dependent synthetase and l...		Potri.003G099700 [exp]	5.00	0.7690	Ptr4CL13
AT4G35300		TMT2	tonoplast monosaccharide trans...		Potri.009G168500 [exp]	7.48	0.8195
AT1G09450		AtHaspin	Haspin-related gene, Protein ...		Potri.005G003400 [exp]	10.00	0.7693
AT1G30760			FAD-binding Berberine family p...		Potri.001G463550 [exp]	14.14	0.7672
AT3G56850	bZIP	DPBF3, AREB3	ABA-responsive element binding...		Potri.016G024000 [exp]	20.39	0.7791
AT5G39050		PMAT1	phenolic glucoside malonyltran...		Potri.010G208100 [exp]	23.66	0.7461
AT2G33150		PED1, KAT2, PKT...	PEROXISOME DEFECTIVE 1, 3-KETO...		Potri.001G051800 [exp]	27.05	0.7520
AT2G01940	C2H2ZnF	SGR5, ATIDD15	SHOOT GRAVITROPISM 5, ARABIDOP...		Potri.015G033100 [exp]	33.16	0.7088
AT1G23390			Kelch repeat-containing F-box ...		Potri.010G042900 [exp]	39.68	0.7148
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.013G076501 [exp]	51.61	0.7612

Compare expression of checked genes

Potri.003G123700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.