Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63250 883 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT2G07750 860 / 0 DEA(D/H)-box RNA helicase family protein (.1) AT5G08610 607 / 0 PDE340 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G63630 602 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G08620 580 / 0 ATRH25, STRS2 STRESS RESPONSE SUPPRESSOR 2, RNA HELICASE 25, DEA(D/H)-box RNA helicase family protein (.1) AT3G18600 213 / 7e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G65900 206 / 7e-57 DEA(D/H)-box RNA helicase family protein (.1) AT5G60990 194 / 4e-54 DEA(D/H)-box RNA helicase family protein (.1) AT3G22330 188 / 1e-50 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT2G42520 187 / 4e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G107300 [exp] 1304 / 0 AT1G63250 841 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.002G169800 [exp] 594 / 0 AT5G63630 810 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G097700 [exp] 594 / 0 AT5G63630 768 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.009G045300 [exp] 217 / 3e-61 AT3G18600 747 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G250700 [exp] 217 / 6e-61 AT3G18600 740 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G013900 [exp] 211 / 2e-60 AT5G60990 579 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.007G068800 [exp] 205 / 4e-58 AT5G60990 656 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.006G249100 [exp] 203 / 1e-57 AT5G60990 619 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G423300 [exp] 194 / 8e-52 AT5G54910 858 / 0.0 DEA(D/H)-box RNA helicase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043479 [exp] 860 / 0 AT1G63250 767 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10030265 [exp] 593 / 0 AT3G61690 1089 / 0.0 nucleotidyltransferases (.1) Lus10004017 [exp] 576 / 0 AT5G63630 797 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10012633 [exp] 551 / 0 AT5G08610 719 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10010127 [exp] 492 / 1e-166 AT5G08610 639 / 0.0 PIGMENT DEFECTIVE 340, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10034109 [exp] 464 / 1e-158 AT1G63250 444 / 5e-152 DEA(D/H)-box RNA helicase family protein (.1) Lus10034110 [exp] 394 / 5e-130 AT2G07750 330 / 7e-106 DEA(D/H)-box RNA helicase family protein (.1) Lus10031761 [exp] 208 / 4e-59 AT5G60990 679 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Lus10027240 [exp] 210 / 2e-58 AT3G18600 748 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009616 [exp] 210 / 3e-58 AT3G18600 721 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit
Representative CDS sequence Show only first row Show all	>Potri.003G124100.1 pacid=42785794 polypeptide=Potri.003G124100.1.p locus=Potri.003G124100 ID=Potri.003G124100.1.v4.1 annot-version=v4.1 ATGTACCCATCACTCCTCCGCCGCTCCAAATTCTTATCGGAACAGCTCCGGACCCGGGTCGTCATTCGACTAATGGGTGGTGGACCCCTAAGCTTCCCTG GAGGTCTAAACAAATGGCAATGGAAACGTCTCCACGAGAAAAAAGCCAAAGAAAAAGAGAAACGGCTCCTTGATCAAGAAAAACAACTCTTCCAGGACCG GATGCGTTCCCAAATCCGCTCCAACCTCGCTGGCCAATCCCACCCTAACCTGAATCCGGACCCAAATAAGTACAACCCCATGAGCCCCAACGAGCACCTC AAAGCCCTCGCTGACCGTTTCATGAAAGATGGAGCTGAAGATTTGTGGAACGAAAATGATGGGTCATTGAAACCCCCATCGGATGAACAGACTGAATTCG TGGGGACTAATCAACAGCCAGGATCAATTCATTCGCCGGTGGATTTGAGAAAATTAATATCAGAAGGGCGTCATGTGTCGCAGAATCGCGAAAATGGGTT TAATTTTGTGAAAAGTAGAGATTATTCGATGCTTAGAGATTTGGGTTTTGAGTCTGGAGGTGATTCTACTAAGCCTTTAGCGCGGAGACAGAGAAAGTTT AGGATAAATGAGAGTTCTTCGAGTGTTGATGATGAAGATCATGGGTTTGTTAATGACAAAGTGAAGAATTTCGTAGGAGATTCATGGAATGAGCGAGGAG GCGTGAGTAATTTGAGGAATGTGAGTGATTTCATGAAGAATAGGGGTTCTGAGACAGTAAAACAGAGGAGGTTTCAGAGAAATGAGAGTGATGATGAGGA TGAGGATTTGGAGGGTGGGGGAGATAGGAGAGGGAGGAGTGCGACTGATATTGGGAGTAGAGCTGCTTTAGGAAAGTATGATATGAAGAAGACAAGAAGG GTTCCATTAAAGGAGCTTGATAAGAATGATTTTGCGAACGAAGTGGAGTTGATTAGATACGAGCTGGGGAGGAAGAAAAAGTTTGCCGGAAATGAAGGAG ATAAGGAGGAGGAGGATTCAATTCTTAGCGAAAAAAGATTTGATGAATGTGGTCTGTCTCCGTTGACTGTCAAAGCACTTATAGCTGCTGGTTATGTTCA AATGACCAGGGTACAGGAGGCTACTCTTTCTGTTTGCCTTGAGGGCAAGGATGCTATGGTCAAAGCCAAAACTGGCACAGGAAAAAGCGCAGCTTTTTTG CTTCCTGCAATTGAAGCAGTTCTGAAGGCAACAAGTAGCAATGACAAGCCACAAGTGTCCCCTATATATGCTCTTATTCTCTGCCCCACAAGAGAACTAG CAAGTCAGATAGCTGCAGAAGCAAATGCTATGCTGAAATACCATGATGGAATTGGTGTGCTAACACTAGTTGGAGGAACACGTTTCAAAGATGATCAGAG ACGCCTTGAATCAGATCCTTATCAGATAATTGTTGCAACTCCTGGTCGGCTGCTGGATCACATTGAGAATAAAGGTGGTTTATCTGTGCATTTGATGGGA TTGAAGGTGCTTATACTTGACGAGGCTGATCACCTTCTTGATCTTGGGTTTCGGAAGGATATGGAGAAAATTTTAGACTGCTTGCCCCGTCAGAGACAGT CGTTGCTATTTTCTGCAACAATTCCAAAAGAGGTTCGTCGAATTTCTCAGCTTGTATTGAAAAGGGAACATGCTTTCATTAATACTGTGGGTGTTGGTTG TGTGGAAACTCCTGCTAAGATCAAGCAGTCTTTTCTTGTCTCTCCACACAGATTGCATTTTCAAGTAGTGCACCATCTTCTGAAGGAGCATATTCTGCAG GCACCTGATTACAAGGTTATTGTTTTCTGTACAACTGGAATGGTAACATCACTCATGTATCTACTTCTTCGGGAAATGAATATGAATGTAAGGGAGATGC ATTCTAGAAAGCCTCAACTTTATCGAACTCGTGTCTCTAATGAATTCCGGGAATCGAAACGATTGATTCTCGTTACATCTGATGTTTCTGCTCGTGGAAT GAATTATCCTGATGTTACTTTGGTCATTCAGGTGGGAATTCCTTATGATCGTGAACATTATATCCATCGGCTTGGAAGAACAGGACGCGAAGGGAAAGAT GGAGAAGGGATCTTATTGCTCGCTCCATGGGAAGAATATTTCCTGAATGAGTTAAAAGACCTGCCACTCGAGAAATTCCCTTTACCACAAATTGATTCTG AAACAAATTTTAAGATGGAGGAGTCAATGTCAAAGATTGATAGTAGTGTTAAAGAAGGAGCATATCATGCTTGGCTAGGGTATTATAACTCCATCAGAGA GATTGGAAGGGATAAAACGACGCTTGTTGAGCTGGCCAACCAATTTTCCGAGTCAATAGGCTTACATAAACCTCCTTCCCTCTTCAGAAAAACCGCTCTA AAGATGGGTTTGAAAGACATCCCTGGTATCCGGATCCGGAGGTAG
AA sequence Show only first row Show all	>Potri.003G124100.1 pacid=42785794 polypeptide=Potri.003G124100.1.p locus=Potri.003G124100 ID=Potri.003G124100.1.v4.1 annot-version=v4.1 MYPSLLRRSKFLSEQLRTRVVIRLMGGGPLSFPGGLNKWQWKRLHEKKAKEKEKRLLDQEKQLFQDRMRSQIRSNLAGQSHPNLNPDPNKYNPMSPNEHL KALADRFMKDGAEDLWNENDGSLKPPSDEQTEFVGTNQQPGSIHSPVDLRKLISEGRHVSQNRENGFNFVKSRDYSMLRDLGFESGGDSTKPLARRQRKF RINESSSSVDDEDHGFVNDKVKNFVGDSWNERGGVSNLRNVSDFMKNRGSETVKQRRFQRNESDDEDEDLEGGGDRRGRSATDIGSRAALGKYDMKKTRR VPLKELDKNDFANEVELIRYELGRKKKFAGNEGDKEEEDSILSEKRFDECGLSPLTVKALIAAGYVQMTRVQEATLSVCLEGKDAMVKAKTGTGKSAAFL LPAIEAVLKATSSNDKPQVSPIYALILCPTRELASQIAAEANAMLKYHDGIGVLTLVGGTRFKDDQRRLESDPYQIIVATPGRLLDHIENKGGLSVHLMG LKVLILDEADHLLDLGFRKDMEKILDCLPRQRQSLLFSATIPKEVRRISQLVLKREHAFINTVGVGCVETPAKIKQSFLVSPHRLHFQVVHHLLKEHILQ APDYKVIVFCTTGMVTSLMYLLLREMNMNVREMHSRKPQLYRTRVSNEFRESKRLILVTSDVSARGMNYPDVTLVIQVGIPYDREHYIHRLGRTGREGKD GEGILLLAPWEEYFLNELKDLPLEKFPLPQIDSETNFKMEESMSKIDSSVKEGAYHAWLGYYNSIREIGRDKTTLVELANQFSESIGLHKPPSLFRKTAL KMGLKDIPGIRIRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.003G124100 [exp]	0	1
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.005G017600 [exp]	1.73	0.8582	Pt-LON_ARA_ARA.2
AT4G28450			nucleotide binding;protein bin...		Potri.007G137300 [exp]	2.44	0.8487
AT3G56690		CIP111	Cam interacting protein 111 (....		Potri.006G035000 [exp]	2.82	0.8490	Pt-CIP111.1
AT2G02150		EMB2794	EMBRYO DEFECTIVE 2794, Tetratr...		Potri.010G098400 [exp]	3.16	0.8311
AT3G14120			unknown protein		Potri.001G165900 [exp]	6.92	0.7999
AT1G26370		RID1	RNA helicase family protein (....		Potri.008G096800 [exp]	8.48	0.8195
AT3G52210			S-adenosyl-L-methionine-depend...		Potri.010G233100 [exp]	9.48	0.8186
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.010G145150 [exp]	11.74	0.8235
AT1G45332			Translation elongation factor ...		Potri.001G123600 [exp]	12.16	0.8444
AT5G26860		LON1, LON_ARA_A...	lon protease 1 (.1)		Potri.013G008900 [exp]	13.96	0.8081	Pt-LON_ARA_ARA.1

Compare expression of checked genes

Potri.003G124100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.