Plant FIBer expression Database

Potri.003G124200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G12800 726 / 0 Nucleic acid-binding, OB-fold-like protein (.1)
AT3G23700 79 / 3e-15 Nucleic acid-binding proteins superfamily (.1)
AT3G11964 52 / 3e-06 RNA binding;RNA binding (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G148500
[exp]
77 / 7e-15 AT3G23700 439 / 2e-153 Nucleic acid-binding proteins superfamily (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10000288
[exp]
513 / 9e-171 AT1G12800 478 / 5e-157 Nucleic acid-binding, OB-fold-like protein (.1)
Lus10008475
[exp]
180 / 2e-48 AT1G12800 207 / 3e-58 Nucleic acid-binding, OB-fold-like protein (.1)
Lus10022587
[exp]
76 / 3e-14 AT3G23700 374 / 3e-128 Nucleic acid-binding proteins superfamily (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0021 OB PF00575 S1 S1 RNA binding domain
Representative CDS sequence
>Potri.003G124200.1 pacid=42784541 polypeptide=Potri.003G124200.1.p locus=Potri.003G124200 ID=Potri.003G124200.1.v4.1 annot-version=v4.1
ATGGACTGTCTTGCTCTTGCCACCACCTCAGCCACTTCATCTTCCTTCTCTGTGAGAAAAATACTGTTTCCTTCACCATCAGTTGCAGTAAGAGCAAGAA
GTAGCAGAAAAGAAATATGGTTTCCTAGGAAAAATGGGTTCTTGGTTTTGGCTGCAAAAGAAGAAGGACAACCAAAGCTGGACCAGTGGGACCAAATGGA
GCTCAAGTTTGGTCATTTACTTGGTGAAGACCCCAAACTTACTCTTGCTAAGATAATGGCTAGAAAAGAAAACCCGGATGTTTCATATCTTGAAGTTGAG
AAATCATTTTACAAGAATAAGGGTAGAGCAGTAGAAATAAAGGAGGTTCCTTTTGATGTTTCAATGAAAAAGAAACCATCCAATACAATAAAGGAGGTTC
CTTTTGATGTTTCAATGAAAAAGAAACCATCCAATGTATTGGATGGTTTGAATTTAGTTCGGCCGGTTCCGAAGGAAGGATTTAAATTTCAAGAAGAGGA
TAAGCCAGTAGCTCCTCCCAAGATAAAGAAATCAAACCAACCTGTTGAAAAAGCAATGGATAACGCAAAGCGTAGTGTTCCAAATGTTATTTTGAGAAAG
CCATCTTTGTATGTAGAGGATGATGTGGAAGATAGGCCATCTAGGAATAGGGTGAATATTTTACCAAATTTAACATTGAAAATGGGAAATGATCAAAATA
AGGAGAAGTTTAGTGATATGACACTATTGAGAAAGCCACGACCAATGAGTGTTGATGAGAAGCCAGATTCTGGCAATTTGGGAACTGAAGTTAATCATGA
TGGTGCTGGAATGAGGGTTGAAAAAGAAGAAGGTGAGAATAGATATAGTGGTTTTACGCTGTTAAAAAAACCCAAAACTATGAAGATTGAGTTCAAGGAG
TCTTCAGAAACCGGGGATGCCTCATTTGTGGAGGAGCAAGAAGTAGAAGATAACTACATATCAGGAAGGCAGCCATCGGAGAAGAGCAATATTGAGTTCA
CTGAAGAGGAAGCTGCCCTAAACCAACAATCTGGTAACAATTTGGTTGATTCTGCTGTCAAGATCTCTATGGAAGCTGCATTGCAAGGGAAACCAAAGAG
ATTAGACCAATATGTTGAAGCGACATCAGCCTCTAGAGTAGAAGATTTGAATCTTGTAAATGCTGAAAATCTTGGAAATGCTAATGAGGATGTCACTTCC
ATATCACCACTGGAGGATGCTGATTGGAAAAGGGCAGATGATTTGCTTAGGACAGGAGATAGAGTAGAAGTTGAGTTAATTAGCTTCAGCGTAAGAGGTT
TCATTGTATCTTTTGGCTCTCTGGTAGGATTTTTGCCATACCGTAACCTAGCTGCAAGGTGGAAGTTCTTAGCTTTTGAGTCATGGTTGAAACAGAAAGG
CTTGGATCCATCACTCTACAAGAAAAACTTAGGAATAATTGGAAGCTACAATGTCCCAGAAAAGAACAGTTCTCTTGATTCAAGCATTGTTCCAAATATG
GATAGAAAAATTGAGGTAGAAAATAAGCCGGATATGAAGTTAGAGGATCTTCTTATGCTATATGACCAAGAAAAACTGAAGTTCCTGTCTTCTTTTGTTG
GTCAGAAAATCAAAGTGAACGTGGTTATTGCTGATAGAAAATTGAGGAAACTTGTAGTTTCTCTGAGGCCAAAAGAGAAGGAAGAGTTGGTTGAGAAAAA
GAGACATCTCATGGCTACACTTCAAATTGGGGATGTTGTGAAATGCTGCATCAAGAAAGTAACTTATTTTGGCATTTTTGTTGAGGTTGAAGGTGTGCCT
GCGTTAATTCATGCATCGGAGGTCTCATGGGATGCCACTCTGAACCCTGCATCCTGTTTTAAAGTTGGTCAGATTGTGGAGGCAAAAGTTCACCAATTGG
ACTTTACCCTTCAACGTATTTTCTTATCATTGAAGGAGATTACACCTGATCCTCTGATTGAGACCCTGGAATCTGTCTTTGGTGGTCGTGCTCCCCTGGA
TGGGAGATTACAAGCAGCAGAAGCAGATTCTGAGTGGGCTGATGTTGAAACACTTGTCAAAGAGTTGCAACAAATTGAAGGGATCCAGTCTGTATCTAGA
GGCCGCTTCTTTTTGAGTCCAGGTTTAGCTCCCGCATTTCAGGTTTATATGGCGTCCATGTTTGAGAATCAATACAAATTGCTTGCTCGATCTGGAAACA
AAGTACAAGAGGTGATAGTTCAGGCATCATTGAGCAAAGAAGAAATGAAATCTACGATTTTGTCTTGCACTAACAGAGTGGAATAG
AA sequence
>Potri.003G124200.1 pacid=42784541 polypeptide=Potri.003G124200.1.p locus=Potri.003G124200 ID=Potri.003G124200.1.v4.1 annot-version=v4.1
MDCLALATTSATSSSFSVRKILFPSPSVAVRARSSRKEIWFPRKNGFLVLAAKEEGQPKLDQWDQMELKFGHLLGEDPKLTLAKIMARKENPDVSYLEVE
KSFYKNKGRAVEIKEVPFDVSMKKKPSNTIKEVPFDVSMKKKPSNVLDGLNLVRPVPKEGFKFQEEDKPVAPPKIKKSNQPVEKAMDNAKRSVPNVILRK
PSLYVEDDVEDRPSRNRVNILPNLTLKMGNDQNKEKFSDMTLLRKPRPMSVDEKPDSGNLGTEVNHDGAGMRVEKEEGENRYSGFTLLKKPKTMKIEFKE
SSETGDASFVEEQEVEDNYISGRQPSEKSNIEFTEEEAALNQQSGNNLVDSAVKISMEAALQGKPKRLDQYVEATSASRVEDLNLVNAENLGNANEDVTS
ISPLEDADWKRADDLLRTGDRVEVELISFSVRGFIVSFGSLVGFLPYRNLAARWKFLAFESWLKQKGLDPSLYKKNLGIIGSYNVPEKNSSLDSSIVPNM
DRKIEVENKPDMKLEDLLMLYDQEKLKFLSSFVGQKIKVNVVIADRKLRKLVVSLRPKEKEELVEKKRHLMATLQIGDVVKCCIKKVTYFGIFVEVEGVP
ALIHASEVSWDATLNPASCFKVGQIVEAKVHQLDFTLQRIFLSLKEITPDPLIETLESVFGGRAPLDGRLQAAEADSEWADVETLVKELQQIEGIQSVSR
GRFFLSPGLAPAFQVYMASMFENQYKLLARSGNKVQEVIVQASLSKEEMKSTILSCTNRVE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G12800 Nucleic acid-binding, OB-fold-... Potri.003G124200
[exp]
0 1
AT3G02690 nodulin MtN21 /EamA-like trans... Potri.012G145300
[exp]
1.00 0.9801
AT5G08650 Small GTP-binding protein (.1) Potri.001G305300
[exp]
3.16 0.9747
AT3G06980 DEA(D/H)-box RNA helicase fami... Potri.010G004700
[exp]
4.00 0.9700
AT4G08920 OOP2, HY4, BLU1... OUT OF PHASE 2, ELONGATED HYPO... Potri.005G164700
[exp]
4.89 0.9627 CRY1.1
AT2G36990 SIG6, SIGF, ATS... SIGMA FACTOR 6, RNApolymerase ... Potri.006G125700
[exp]
5.00 0.9661 SIGF.1
AT3G24430 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE ... Potri.018G076600
[exp]
5.47 0.9741 Pt-HCF101.1
AT5G51690 ACS12 1-amino-cyclopropane-1-carboxy... Potri.015G132100
[exp]
6.24 0.9438
AT2G18940 Tetratricopeptide repeat (TPR)... Potri.006G166200
[exp]
6.92 0.9659
AT4G02260 AT-RSH1, RSH1, ... RELA-SPOT HOMOLOG 1, RELA/SPOT... Potri.014G126700
[exp]
8.94 0.9612 RSH1.2
AT5G54290 CcdA cytochrome c biogenesis protei... Potri.001G406700
[exp]
9.79 0.9545

Potri.003G124200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.